| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,438,020 – 14,438,121 |
| Length | 101 |
| Max. P | 0.551690 |
| Location | 14,438,020 – 14,438,121 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.91 |
| Shannon entropy | 0.32787 |
| G+C content | 0.43910 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.22 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14438020 101 - 22422827 -UGCCCUUUGACCUGCUCUAAGCAUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCGCUGAACUUGAACUUGCUAGACUCUCGAGCAAAAUGACUGAAC--- -............(((((..((((...........(((((...(((((((((.....))))))))))))))..)))).(.....))))))............--- ( -22.12, z-score = -1.80, R) >droSim1.chrX 11125296 101 - 17042790 -UGCCCUUUGACCUGCUCUAAGCAUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCGCUGAACUUGAACUUGCUAGACUCUCGAGCAAAAUGACUGAAC--- -............(((((..((((...........(((((...(((((((((.....))))))))))))))..)))).(.....))))))............--- ( -22.12, z-score = -1.80, R) >droSec1.super_20 1035885 101 - 1148123 -UGCCCUUUGGCCUGCUCUAAGCAUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCGCUGAACUUGAACUUGCUAGACUCUCGAGCAAAAUGACUGAAC--- -......((((..(((.....)))..)))).....(((((...(((((((((.....)))))))))))))).(((((.(.....).)))))...........--- ( -25.90, z-score = -2.29, R) >droYak2.chrX 8680475 104 - 21770863 -UGCCCUUUGACCUGCUCUAAGCAUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCGCUGAACUUGAACUUGCUGGAGUCUCGAGCAAAAUGACUGAACUGA -............(((((..((.((((((......(((((...(((((((((.....)))))))))))))).....)))))))).)))))............... ( -27.90, z-score = -2.61, R) >droAna3.scaffold_13248 2165499 100 - 4840945 CCCCUUUUUGACCUGAUCUAAGCGUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCUUUGAACUUGAACUUGCCCGAC--UUGGCUAAAAUGAGUGAAC--- .........(((((......)).)))....((((((((((...((((((.((.....)).))))))))))....(((....--..)))......))))))..--- ( -13.90, z-score = 0.33, R) >droWil1.scaffold_180588 228215 101 - 1294757 UGCCCUACUGAACCCGCCUAAGCAUU-CAAUUACUUGCAAUUUGUUUAGCGCACAUUGCGCCGAACUUGAACUUGUUUGCUAACUGAGCAACAGCAGCAACA--- (((.....((((...((....)).))-))......(((.....(((..((((.....))))..))).......((((.(((.....)))))))))))))...--- ( -21.80, z-score = -0.61, R) >consensus _UGCCCUUUGACCUGCUCUAAGCAUUCCAAUUACUUUCAAUUUGUUUAGCGCGCUUUGCGCUGAACUUGAACUUGCUAGACUCUCGAGCAAAAUGACUGAAC___ ...................................(((((...(((((((((.....)))))))))))))).(((((.(.....).))))).............. (-15.44 = -15.22 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:43 2011