| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,431,619 – 14,431,719 |
| Length | 100 |
| Max. P | 0.627591 |
| Location | 14,431,619 – 14,431,719 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 89.88 |
| Shannon entropy | 0.15980 |
| G+C content | 0.39820 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -19.89 |
| Energy contribution | -19.32 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14431619 100 - 22422827 UUUAAAAUCGCCAAAAAAAAAAAAGCGUCCAAUUAUGUCUGCUUUACGCGGGCACUCGCCAAAAUUUAAAUGAUUUCGUUUUGAGUGCGUUUUGGGAUUU ....(((((.((((((.....((((((..((....))..))))))......(((((((.........(((((....)))))))))))).))))))))))) ( -24.60, z-score = -1.58, R) >droSim1.chrX 11119261 97 - 17042790 CUUAAAAUCGCC---GAAAAAAAAGCGUCCAAUUAUGUCUGCUUUACGCGGGCACUCGCCAAAAUUGAAAUGAUUUCGUUUUGAGUGCGUUUUGGGAUUU ....(((((.((---((((..((((((..((....))..)))))).(((((((....)))....(..(((((....)))))..).))))))))))))))) ( -26.80, z-score = -1.79, R) >droSec1.super_20 1027716 97 - 1148123 CUUAAAAUCGCC---GAAAAAAAAGCGUCCAAUUAUGUCUGCUUUACGCGGGCACUCGCCAAAAUUGAAAUGAUGUCGUUUUGAGUGCGUUUUGGGAUUU ....(((((.((---((((..((((((..((....))..)))))).(((((((....)))....(..(((((....)))))..).))))))))))))))) ( -26.80, z-score = -1.73, R) >droYak2.chrX 8673261 98 - 21770863 UCUAAAAUCGCAA--GACAACAAAAAGGCCAAUUACGGCUGCUUUACGCGGGCACUCACCAAAAUUUAAACGAUUCCGUUUUGAGUGCGUUUUGGGAUUU ....(((((.(((--(((........((((......))))((.....))..(((((((.........(((((....)))))))))))))))))).))))) ( -29.70, z-score = -3.23, R) >consensus CUUAAAAUCGCC___GAAAAAAAAGCGUCCAAUUAUGUCUGCUUUACGCGGGCACUCGCCAAAAUUGAAAUGAUUUCGUUUUGAGUGCGUUUUGGGAUUU (((((((.(((.........................((((((.....))))))(((((.........(((((....)))))))))))))))))))).... (-19.89 = -19.32 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:40 2011