| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,426,125 – 14,426,243 |
| Length | 118 |
| Max. P | 0.954455 |
| Location | 14,426,125 – 14,426,243 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.15886 |
| G+C content | 0.43968 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -23.48 |
| Energy contribution | -23.98 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14426125 118 - 22422827 CCCAAUCCCAUUCCCAUCGGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAAAAUGGCUAUAUAAU .......(((((......((.(((...((......))(((((..(((((((((.....)))))).)))..))))).................))))).......)))))......... ( -24.62, z-score = -1.54, R) >droEre2.scaffold_4690 6215311 106 + 18748788 ------------UUCAGCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAACGGCUAUAUAAU ------------...((((((((....((......))(((((..(((((((((.....)))))).)))..)))))..........)))).((...........))..))))....... ( -25.70, z-score = -1.97, R) >droYak2.chrX 8667095 106 - 21770863 ------------GUCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAUGGCUAUAUAAU ------------....((((......))))..((((((((((..(((((((((.....)))))).)))..)))))............((...)).............)))))...... ( -26.20, z-score = -2.20, R) >droSec1.super_20 1022203 118 - 1148123 CCCAUUCCAAUUCCCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAUGGCUAUAUAAU .((((((.........((((......))))...(((.(((((..(((((((((.....)))))).)))..)))))(((.......)))....)))........))))))......... ( -27.30, z-score = -2.64, R) >consensus ____________CCCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAUGGCUAUAUAAU ................((((......))))..((((((((((..(((((((((.....)))))).)))..)))))............((...)).............)))))...... (-23.48 = -23.98 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:39 2011