| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,405,473 – 14,405,572 |
| Length | 99 |
| Max. P | 0.505457 |
| Location | 14,405,473 – 14,405,572 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.77 |
| Shannon entropy | 0.56510 |
| G+C content | 0.53152 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -14.20 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14405473 99 - 22422827 ACCUCGGCUCGAUAACUUAUCGGCCAUAGUCCAGCUUUGACCAGCUGCCCAUUGUUGUUGUCCGGGUUGUCUAAGAUGUCCUGGUUGUCCUGGCU----UGGU------ .....(((.(((((...)))))))).....((((((..(((((((.((.....)).)))).(((((.((((...)))).)))))..)))..))).----))).------ ( -28.90, z-score = -0.65, R) >droSim1.chrX 11092550 108 - 17042790 ACCUCGGCUCGAUAACUUAUCGGCCAUAGUCCAGCUUCGACCAGCUGCCCAUUGUUGUUGUCCGGGUUGUCCAAGUUGUCCUGGUUGUCUUGGUUGUCCUGGCUUGGU- (((..((((.(((((((...((((((..(..((((((.(((.(.(((..((.......))..))).).))).))))))..)))))))....)))))))..)))).)))- ( -35.00, z-score = -1.70, R) >droSec1.super_20 999192 108 - 1148123 ACCUCGGCUCGAUAACUUAUCGGCCAUAGUCCAGCUCCGACCAGCUGCCCAUUGUUGUUGUCCGGGUUGUCCAAGUUGUCCUGGUUGUCUUGGUUGUCCUGGCUUGGU- (((..((((.(((((((...((((((..(..(((((..(((.(.(((..((.......))..))).).)))..)))))..)))))))....)))))))..)))).)))- ( -33.40, z-score = -1.04, R) >droYak2.chrX 8644187 109 - 21770863 ACCUCGGCUCGAUAACUUAUCGGCCAUAGUCCAGCUUUGGCCAGCUGCCCAUUGUUGUGGUCCUGGUUGUUCAAGUUGUCCUAGUUGUCUUGGAUCACUUGGUUGCCUU ....(((((.((((...))))(((((.((.....)).)))))))))).((((....))))....(((...((((((.((((.((....)).)))).))))))..))).. ( -35.40, z-score = -2.22, R) >droMoj3.scaffold_6680 7768864 90 - 24764193 --------UCAAAAGUUUGACGUUCUUCGUUCAGUUUUGCCACACACGCCACGCCUCCCCUUUGGGCUGCCCGCCCUUUUCUCCUU-UGCAGGCUCUAC---------- --------.(((((.(..((((.....)))).).)))))........(((..((.........((((.....))))..........-.)).))).....---------- ( -15.45, z-score = 0.39, R) >consensus ACCUCGGCUCGAUAACUUAUCGGCCAUAGUCCAGCUUUGACCAGCUGCCCAUUGUUGUUGUCCGGGUUGUCCAAGUUGUCCUGGUUGUCUUGGCUCUCCUGGCU___U_ .....(((.(((((...))))))))...(..((((((.(((((((........))))..))).))))))..).......((.((....)).))................ (-14.20 = -15.40 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:33 2011