| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,397,373 – 14,397,468 |
| Length | 95 |
| Max. P | 0.578286 |
| Location | 14,397,373 – 14,397,468 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.98 |
| Shannon entropy | 0.49828 |
| G+C content | 0.40069 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -7.88 |
| Energy contribution | -8.10 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14397373 95 + 22422827 UUACACAAAUAAAAUAAAAUUUGUUUCGACUCAUAAACAAUAAGAAUGACAGGCGACUGUAACCGAAAGGACAAGGGGACGACGAGAAAAGGACA----------------- ....((((((........)))))).(((.(((................((((....))))..((....)).....))).))).............----------------- ( -16.70, z-score = -2.66, R) >droSim1.chrX 11084828 95 + 17042790 UUACACAAAUAAAAUAAAAUUUGUUUCGACUCAUAAACAAUAAGAAUGACAGGCGACUGUCCCCGAAAGGACGAGAGGACGACGAGAAAAGGACA----------------- ....((((((........)))))).(((.(((...............(((((....))))).((....))....)))..))).............----------------- ( -20.00, z-score = -2.83, R) >droEre2.scaffold_4690 6189821 94 - 18748788 UUACACGAAUAAAAUAAA-UUUGUUUCGACUCAUAAACAAUAAGAGUGACAGGACUCUGCACCCGAAAGGACAAGCGGACGACGAGAAAAGGACA----------------- .....(((((.......)-))))(((((((((...........))))........(((((..((....))....)))))...)))))........----------------- ( -16.10, z-score = -1.26, R) >droAna3.scaffold_13248 2119667 107 + 4840945 UUACACAAAUAAAAUAAAUUUUGUUUCGACUCAUAAACAAUAAGAAUGACAGGCAACUGUCGCCGCGAGGGCAAG--GAAGAGGGACAGAGUCCGA-AGUCCAUUCCAAG-- ....................((((((........)))))).......(((((....)))))(((.....)))..(--(((...((((.........-.)))).))))...-- ( -26.40, z-score = -2.60, R) >dp4.chrXL_group1e 7645714 112 - 12523060 UUACACAAAUAAAAUGAAAUUUCUUUCGACUCAUAAACAAUAAGAAUGACAGGCCAGUGUCGUCGCAAGGGAGAAAGCCAAGCAAAUACAGAGCGACAGUAGAGAAUGAGAG ......................((((((.(((...............((((......))))(((((...((......))..(......)...)))))....)))..)))))) ( -17.90, z-score = -0.60, R) >droPer1.super_17 93129 112 - 1930428 UUACACAAAUAAAAUGGAAUUUCUUUCGACUCAUAAACAAUAAGAAUGACAGGCCAGUGUCGUCGCGAGGGAGAAAGCCCAGCCAAUACAGAGCGACAGUAGAGAAUGAGAG ......................((((((.(((...............((((......))))(((((..(((......))).(......)...)))))....)))..)))))) ( -21.40, z-score = -1.01, R) >consensus UUACACAAAUAAAAUAAAAUUUGUUUCGACUCAUAAACAAUAAGAAUGACAGGCCACUGUCGCCGAAAGGACAAGAGGACGACGAAAAAAGGACA_________________ ...................(((((.......................(((((....))))).((....)))))))..................................... ( -7.88 = -8.10 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:29 2011