| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,385,820 – 14,385,956 |
| Length | 136 |
| Max. P | 0.602220 |
| Location | 14,385,820 – 14,385,956 |
|---|---|
| Length | 136 |
| Sequences | 4 |
| Columns | 144 |
| Reading direction | reverse |
| Mean pairwise identity | 76.97 |
| Shannon entropy | 0.35567 |
| G+C content | 0.48406 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.62 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14385820 136 - 22422827 GACCAGGACCAGGAUCAACAUUGAGCGGGGGAUGGACGGCAGCCAGGGUAGCCUGGGG------UUGAGGGG--AAAAUGGCCAAAUGAGAGCAAACAAACAAACGGCAUAAAGAAUAAGUAAUAAGCAUGCAAAUGCGUCAAG (((..((.(((...(((((.....((.(........).))..(((((....))))).)------))))....--....)))))...........................................((((....)))))))... ( -29.30, z-score = 0.13, R) >droSim1.chrX 11073020 124 - 17042790 ------------GGCCAAAUUUGGGCGGGGAGUGGACGACAGCCAGGGAAACCUGGGG------UUGAGGGG--AAAAUGGCCAAAUGAGAGCAAACAAACAAACGGCAUAAAGAAUAAGUAAUAAGCAUGCAAAUGCGUCAAG ------------.(((..((((((.((.........((((..(((((....))))).)------))).....--....)).))))))..).))............(((..........(....)..((((....)))))))... ( -32.57, z-score = -2.32, R) >droYak2.chrX 8624135 126 - 21770863 -----------------AAAAUGGGCGAUGGGUAUGCU-GAUCCAGGGAAACCUGGGGGUUGGGUGGGGGGGUAAAAAUGGCAAAAUGAGAGCAAACAAACAAACGGCAUAAAGAAUAAGUAAUAAGCAUGCAAAUGCGUCAAG -----------------......((((((..(((((((-..((((((....)))))).((((..((..(..((....((......))....))...)...))..)))).................)))))))..)).))))... ( -34.70, z-score = -4.28, R) >droEre2.scaffold_4690 6178903 124 + 18748788 -----------------AAAAUGGGCGGUGGGGUUGGC--AUCCAGGAAAACCUGGGGA-CGGGGGGCUGGGGGGAAAUGGCCAAAUGAGAGCAAACAAACAAACGGCAUAAAGAAUAAGUAAUAAGCAUGCAAAUGCGUCAAG -----------------....(((((.((...(((.((--.((((......((((....-)))).(((((........)))))...)).)))).....)))..)).))..................((((....)))).))).. ( -28.50, z-score = -0.95, R) >consensus _________________AAAAUGGGCGGGGGGUGGACG_CAGCCAGGGAAACCUGGGG______UGGAGGGG__AAAAUGGCCAAAUGAGAGCAAACAAACAAACGGCAUAAAGAAUAAGUAAUAAGCAUGCAAAUGCGUCAAG ..........................................(((((....)))))......................((((.........((.............))..................((((....)))))))).. (-17.62 = -17.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:26 2011