| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,381,771 – 14,381,864 |
| Length | 93 |
| Max. P | 0.990310 |
| Location | 14,381,771 – 14,381,864 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.05 |
| Shannon entropy | 0.52234 |
| G+C content | 0.59556 |
| Mean single sequence MFE | -39.66 |
| Consensus MFE | -21.12 |
| Energy contribution | -23.08 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14381771 93 - 22422827 -AGAAUGGAUGGUGGUGCUGGGAGCAAACAGAAUGCCGCACGUCCGGUGUGUGGCAACUGCAACUGCAACAC---------CCCCACCACCGCCAGCGAAAGG--- -....(((.((((((((..(((...........(((((((((.....)))))))))..(((....)))...)---------)).))))))))))).(....).--- ( -39.70, z-score = -2.23, R) >droEre2.scaffold_4690 6174171 102 + 18748788 -AGAAUGGCAGGUGGUGCUGGGAGCAAACAGAAUGCCGCACGUCCGGCGUGUGGCAACAGUAACUGCAACUGCAACUGCCGCACCACCAGCACCACCGAGAGC--- -.........(((((((((((..((........(((((((((.....))))))))).((((...(((....)))))))..))....)))))))))))......--- ( -48.30, z-score = -3.40, R) >droAna3.scaffold_13248 2102555 87 - 4840945 ACCACUGUUCGGGGGAUUCAAGAACAAGCGGAAAGCU---CUUCCGUUCUCCGCCAUUCG-----GCAAA-----------CGCCACCAGUGCCACCAGAAACUAC ..(((((...((.(((..........(((((((....---.))))))).))).))....(-----((...-----------.)))..))))).............. ( -22.80, z-score = -0.71, R) >droSec1.super_20 976064 99 - 1148123 -AGAAUGGCUGGUGGUGCUGGUAGCAAACAGAAUGCCGCACGUCCGGUGUGUGGCAACUGCAACUGCAACACC--CCAAG-CCCCACCACCGCCAGCGAAAGG--- -......((((((((((.(((..((........(((((((((.....)))))))))..(((....))).....--....)-).))).))))))))))......--- ( -42.50, z-score = -2.21, R) >droSim1.chrX 11069084 100 - 17042790 -AGAAUGGCUGGUGGUGCUGGUAGCAAACAGAAUGCCGCACGUCCGGUGUGUGGCAACUGCAACUGCAACACC--CCAAGCCCCCACCACCGCCAGCGAAAGG--- -......((((((((((.(((..((........(((((((((.....)))))))))..(((....))).....--....))..))).))))))))))......--- ( -45.00, z-score = -2.86, R) >consensus _AGAAUGGCUGGUGGUGCUGGGAGCAAACAGAAUGCCGCACGUCCGGUGUGUGGCAACUGCAACUGCAACACC__C_____CCCCACCACCGCCAGCGAAAGG___ .....(((.(((((((((((........)))..(((((((((.....)))))))))............................)))))))))))........... (-21.12 = -23.08 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:25 2011