| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,376,817 – 14,376,911 |
| Length | 94 |
| Max. P | 0.868982 |
| Location | 14,376,817 – 14,376,911 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 83.83 |
| Shannon entropy | 0.29680 |
| G+C content | 0.31101 |
| Mean single sequence MFE | -15.81 |
| Consensus MFE | -13.34 |
| Energy contribution | -14.14 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14376817 94 + 22422827 UUCUUUUGAAACUAAUAAAUAUACCCUUUGCAAUAAAUCGUGUUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAACGGUC ......................(((.(((((.(((((..(((.....)))..((((((((.....)))))))).....))))).))))).))). ( -17.20, z-score = -2.61, R) >droEre2.scaffold_4690 6167429 94 - 18748788 CUCCUUCGAAAAUAUUAAAUAUACCCUUUGCCAUAAAUCUCGUUCAUCGCAAUUUGCCAUAAAGCAUAGUAAAACUAUUUUAUAGUGGAGAGCC ((((....((((((.......((..(((((...(((((..((.....))..)))))...)))))..)).......)))))).....)))).... ( -10.94, z-score = -0.12, R) >droYak2.chrX 8615023 94 + 21770863 CUUUUUUGAAAAUAAUAAGUAUACUCUUUGCAAUAAAUCUUGUUCAACGCAAUUUGCCAUAAACCAUAGUAAAACUAUUUUAUAGUAAGAGGGC .......................(((.((((.................)))).((((.(((((..((((.....))))))))).)))))))... ( -9.23, z-score = 1.20, R) >droSec1.super_20 971258 81 + 1148123 -------------AAUAAAUAUACUCUUUGCAAUAAAUCGUGAUCAUCGCAAUUUGCCAUAAACCAGGGUAAAACUAUUUUAUAGUAAAGGGGC -------------..........((((((((.(((((..(((.....)))..((((((.........)))))).....))))).)))))))).. ( -18.20, z-score = -2.83, R) >droSim1.chrX 11064143 94 + 17042790 UUCUUUUGAAGCUAAUAAAUAUACCCUUUGCAAUAAAUCGUGUUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAAGGGGC .......................((((((((.(((((..(((.....)))..((((((((.....)))))))).....))))).)))))))).. ( -23.50, z-score = -3.25, R) >consensus CUCUUUUGAAAAUAAUAAAUAUACCCUUUGCAAUAAAUCGUGUUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAAGGGGC .......................((((((((.(((((..(((.....)))..((((((((.....)))))))).....))))).)))))))).. (-13.34 = -14.14 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:24 2011