| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,396,107 – 11,396,200 |
| Length | 93 |
| Max. P | 0.914070 |
| Location | 11,396,107 – 11,396,200 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Shannon entropy | 0.40853 |
| G+C content | 0.55006 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -16.16 |
| Energy contribution | -18.95 |
| Covariance contribution | 2.79 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11396107 93 - 23011544 AUAAAGCCCCAUCGCAGACGGCCGACCGAUU---CGGGUACGGA---ACUCGAAAUUGGCCAGGUCGAAAGAUCGGGCAAUCGUCAAUCGACAGCACUU------- .....((((..........((((((....((---(((((.....---))))))).)))))).((((....))))))))....(((....))).......------- ( -34.10, z-score = -2.57, R) >droSim1.chr2L 11204611 96 - 22036055 AUAAAGCCCCAUCGCAGACGGCCGACCGAUUC--CGGCUACGGA-ACACUCGAAAUUGGCCAGGUCGAAAGAUCGGGCAAUCGUCAAUCGACAGCACUU------- .....((((..........((((((.((((((--((....))))-)...)))...)))))).((((....))))))))....(((....))).......------- ( -35.40, z-score = -3.12, R) >droSec1.super_3 6790434 96 - 7220098 AUAAAGCCCCAUCGCAGACGGCCGACCGAUUC--CGGCUACGGA-ACACUCGAAAUUGGCCAGGUCGAAAGAUCGGGCAAUCGUCAAUCGACAGCACUU------- .....((((..........((((((.((((((--((....))))-)...)))...)))))).((((....))))))))....(((....))).......------- ( -35.40, z-score = -3.12, R) >droYak2.chr2L 7794086 95 - 22324452 AUAAAGCCCCAUCGCAGACGGCCGACCGAUUCGGCGGGUACGGA---ACUCGAAAUUGGCCAGGUCGAAAGAUCG--------UCAAUCGACAGCACUUGUAUAUG .....((....(((..((((((((((((...)))(((((.....---)))))...)))))).((((....)))))--------))...)))..))........... ( -28.60, z-score = -0.87, R) >droEre2.scaffold_4929 12597709 93 + 26641161 AUAAAGCCCCAUCGCAGACGGCCGACCGAUU---CGUUUACGGA---ACUCCAAGUUGGCCAGGUCGAAAGAUCGGGCAAUCGUCAAUCGACAGCACUU------- .....((((..........(((((((.((((---((....))))---..))...))))))).((((....))))))))....(((....))).......------- ( -32.00, z-score = -2.69, R) >droAna3.scaffold_12916 12104170 75 + 16180835 -------------AUAAAGCCCGGUCCGAUU---CGGAUACGGGGGAACUCAGAGCGGACCAGGUCGGGCAAUCG--------UCAAUCGACAGCGAUU------- -------------.....((((((((((.((---((....)(((....))).))))))))).....))))(((((--------(.........))))))------- ( -26.10, z-score = -1.45, R) >consensus AUAAAGCCCCAUCGCAGACGGCCGACCGAUU___CGGCUACGGA___ACUCGAAAUUGGCCAGGUCGAAAGAUCGGGCAAUCGUCAAUCGACAGCACUU_______ .....((((..........(((((((((......)))...(((......)))...)))))).((((....))))))))....(((....))).............. (-16.16 = -18.95 + 2.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:22 2011