| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,368,442 – 14,368,501 |
| Length | 59 |
| Max. P | 0.912263 |
| Location | 14,368,442 – 14,368,501 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 60.24 |
| Shannon entropy | 0.72519 |
| G+C content | 0.52985 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -8.38 |
| Energy contribution | -9.42 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14368442 59 + 22422827 AGGUCCAUAGUUACCACUGGGUGGUGGUGGUGGAGGUCCAUAGUUACCACUUGGUGGUG------ ...........((((((..((((((((..((((....))))..))))))))..))))))------ ( -29.60, z-score = -3.98, R) >droSim1.chrX 11055807 59 + 17042790 AGGUCCAUAGUUACCACUUGGAGGUGGUGGUGGAGGUCCGUAGUUACCACUUGGUGGUG------ .((.((...(..((((((....))))))..)...)).)).....((((((...))))))------ ( -20.50, z-score = -1.24, R) >droSec1.super_20 962862 59 + 1148123 AGGCCCAUAGUUACCACUUGGAGGUGGUGGUGGAGGUCCGUAGUUACCACUUGGUGGUG------ .(((((...(..((((((....))))))..).).))))......((((((...))))))------ ( -19.50, z-score = -0.38, R) >droEre2.scaffold_4690 6159546 53 - 18748788 AGGCCCGUAGUUACCAACUGG---UGGUGGUGGGGGUCCAAAGUUACCAAUUGGUG--------- .(((((.((.((((((.....---)))))))).)))))......((((....))))--------- ( -17.40, z-score = -0.50, R) >droMoj3.scaffold_6498 690873 65 - 3408170 AAACGCAUCAGCAAAAAGCUGCUGUUGCGGUGAAACGCCAUACGCAGGACCAAAUAUAUGUGGUA ....(((.(((((......))))).)))((((...)))).........((((........)))). ( -17.70, z-score = -0.90, R) >triCas2.ChLG7 11131419 57 + 17478683 UGGUCUGUCAUAACCGCCUAUUGGAGGUCUUGGCCGGUCAUAGUUGCUACUAGGUGG-------- ((..(.((((..(((.((....)).)))..)))).)..))((((....)))).....-------- ( -17.50, z-score = -0.85, R) >consensus AGGCCCAUAGUUACCACUUGGAGGUGGUGGUGGAGGUCCAUAGUUACCACUUGGUGGUG______ .............(((((....(((((((((((....)))...)))))))).)))))........ ( -8.38 = -9.42 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:22 2011