Locus 14607

Sequence ID dm3.chrX
Location 14,358,262 – 14,358,357
Length 95
Max. P 0.500000
window20113

overview

Window 3

Location 14,358,262 – 14,358,357
Length 95
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 83.05
Shannon entropy 0.23698
G+C content 0.39331
Mean single sequence MFE -22.33
Consensus MFE -15.23
Energy contribution -16.56
Covariance contribution 1.34
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chrX 14358262 95 + 22422827
UUUGUAUUAAGUACAUUGACUUCUU------------------CCACUCAUCUUUGUCUCCUU-----UUUGUUUCUUAGCCAACCCUUUUGGAUCAAGUGGAACAAAGAUGUCCUUU
..(((((...)))))..........------------------.....(((((((((.(((..-----((((.(((..((......))...))).)))).))))))))))))...... ( -17.60, z-score =  -1.46, R)
>droSec1.super_20 952932 118 + 1148123
UUUGUAUUAAGUACAUUGACAUCUUUAAUCCCAAACUUACCGCCCACUCAUCCUUGCCUCCUUGGCGUUUUGUUUCUUAGCCAACCUUUCUGGAUCAAGUGGAACAAAGAUGUCCUUU
..(((((...)))))..(((((((((.........(.....).(((((.((((........(((((.............))))).......))))..)))))...))))))))).... ( -24.48, z-score =  -2.19, R)
>droSim1.chrX 11049567 118 + 17042790
UUUGCAUUAAGUACAUUGACGUCUUUAAUCCCAAACUUAACGCCCACUCAUCCUUGCCUCCUUGGCGUUUUGUUUCUUAGCCAACCUUUCUGGAUCAAGUGGAACAAAGAUGUCCUUU
.................(((((((((..((((((((..((((((...................))))))..)))).........((.....)).....).)))..))))))))).... ( -24.91, z-score =  -1.94, R)
>consensus
UUUGUAUUAAGUACAUUGACAUCUUUAAUCCCAAACUUA_CGCCCACUCAUCCUUGCCUCCUUGGCGUUUUGUUUCUUAGCCAACCUUUCUGGAUCAAGUGGAACAAAGAUGUCCUUU
.................(((((((((.................(((((.((((........(((((.............))))).......))))..)))))...))))))))).... (-15.23 = -16.56 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:21 2011