| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,355,218 – 14,355,319 |
| Length | 101 |
| Max. P | 0.593247 |
| Location | 14,355,218 – 14,355,319 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 95.38 |
| Shannon entropy | 0.06364 |
| G+C content | 0.47195 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -27.64 |
| Energy contribution | -27.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14355218 101 + 22422827 AAAGUCCCGGAAAUUUUCGGAAUAAAAGUGUUGAAUGUAAAUGCGAGAUUUGGGCAGACGAAACUCAAAGAGCUCCUUCCAAAGGGCAACAGGCCCAAGGA ......((((((......(((......(((((.......)))))(((.((((......)))).))).......)))))))...((((.....))))..)). ( -22.80, z-score = 0.27, R) >droSec1.super_20 949879 101 + 1148123 GAAGUCCCGGAAAUCUUCGGAAUAAAAGUGUUGAAUGUGAAUGCGAGAUUUGGGCAGCCGAAAGGCAAAGAGCUCCUUCCAAAGGGCAACAAGCCCAAGGA ......(((((....))))).......(((((.......)))))....(((((((.(((....))).....((.(((.....))))).....))))))).. ( -30.60, z-score = -1.46, R) >droSim1.chrX 11046061 101 + 17042790 GAAGUCCCGGAAAUCUUCGGAAUAAAAGUGUUGAAUGUGAAUGCGAGAUUUGGGCAGCCGAAAGGCAAAGAGCUCCUUCCAAAGGGCAACAAGCCCAAGGA ......(((((....))))).......(((((.......)))))....(((((((.(((....))).....((.(((.....))))).....))))))).. ( -30.60, z-score = -1.46, R) >consensus GAAGUCCCGGAAAUCUUCGGAAUAAAAGUGUUGAAUGUGAAUGCGAGAUUUGGGCAGCCGAAAGGCAAAGAGCUCCUUCCAAAGGGCAACAAGCCCAAGGA ......(((((....))))).......(((((.......)))))....(((((((.(((....))).....((.(((.....))))).....))))))).. (-27.64 = -27.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:20 2011