| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,345,329 – 14,345,456 |
| Length | 127 |
| Max. P | 0.711978 |
| Location | 14,345,329 – 14,345,456 |
|---|---|
| Length | 127 |
| Sequences | 4 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 67.25 |
| Shannon entropy | 0.49841 |
| G+C content | 0.43824 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -18.78 |
| Energy contribution | -19.34 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.34 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14345329 127 + 22422827 -----AUAUGCAGGCAAACUUUUCUGAGAAGAGCUCGGAUUAUUCGCAGAGUUAACUGCACAUCAGGUUGACCGAGUAUCCGAGCAUCCGAGCAUCCAAGUAUCUAAGUAUCUAAGUAUCCAAGCAUUCAGC -----..((((.((...((((..((.(((...((((((((.((((((((......))))......((....))))))))))))))......((......)).))).)).....))))..))..))))..... ( -31.60, z-score = -1.32, R) >droAna3.scaffold_13334 1409013 118 - 1562580 AUAUUAUCAUUAUUUUUAUUUUCCUUUGGAGAUUUGUAAUUGCUGCCGGCGAUGA----GUAUCUAAGUAUCUGAGUAUCUGAACGUCUAAGUAUCUGAGUGUCCGAGUAUCCAUGCGGUCA---------- ......................((.(((((.(((((....((((...((((.(.(----(...((.((...)).))...)).).))))..))))..))))).)))))(((....)))))...---------- ( -17.30, z-score = 2.29, R) >droSec1.super_20 940271 115 + 1148123 -----AUAUGCAGGAAAACUUUUCUGAGAAGAGCUCGGAUUAUUCGCAGAGUUAACUGCACAUCAGGUUGACCGAGUAUCCGAGCAUCCAAGUAUCUGAGUAUCCAGGCAGCCGAGUACC------------ -----...(((.(((...((((.....)))).((((((((.((((((((......))))......((....)))))))))))))).)))......(((......))))))..........------------ ( -34.50, z-score = -2.43, R) >droSim1.chrX 11035881 115 + 17042790 -----AUAUGCAGGAAAACUUUUCUGAGAAGAGCUCGGAUUAUUCGCAGAGUUAACUGCACAUCAGGUUGACCGAGUAUCCGAGCAUCCAAGUAUCUGAGUAUCCAGGCAGCCGAGUACC------------ -----...(((.(((...((((.....)))).((((((((.((((((((......))))......((....)))))))))))))).)))......(((......))))))..........------------ ( -34.50, z-score = -2.43, R) >consensus _____AUAUGCAGGAAAACUUUUCUGAGAAGAGCUCGGAUUAUUCGCAGAGUUAACUGCACAUCAGGUUGACCGAGUAUCCGAGCAUCCAAGUAUCUGAGUAUCCAAGCAGCCAAGUACC____________ ........(((......((((.........((((((((((.(((((....(((((((........)))))))))))))))))))).)).........))))......)))...................... (-18.78 = -19.34 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:19 2011