| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,335,494 – 14,335,640 |
| Length | 146 |
| Max. P | 0.619978 |
| Location | 14,335,494 – 14,335,640 |
|---|---|
| Length | 146 |
| Sequences | 5 |
| Columns | 162 |
| Reading direction | reverse |
| Mean pairwise identity | 80.30 |
| Shannon entropy | 0.33976 |
| G+C content | 0.38515 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -18.74 |
| Energy contribution | -20.14 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14335494 146 - 22422827 AGAGUGGAAAAUUUUAUGAUGGCAACCUCAAAGUGAAUUA--CACCAAAUACAAGCCAUUCAAGGCUUACAUUUUCUCAAAAUCUCUAUCCUUUCAGUUGUUCUCCACUGUAAUUGGCGAAAACUCACUCACAUAC-UUUGCCAAUCCU------------- ..((((((.(((....(((.((..........(((.....--))).......(((((......))))).....................))..)))...))).))))))...(((((((((...............-)))))))))...------------- ( -27.66, z-score = -1.56, R) >droEre2.scaffold_4690 6131023 135 + 18748788 AGAGUGGAAAA-UUGAUGAUGGCAACCUCAAAGUG--------------------------CAGGCUUACAAUUUCCCAAAAUCUCGAUCCAUUCAGUUGUUCUCCACAGUAAUUGGCGAAAACUCACUCACAUACACGUACAUAUGUACGUUCGCAAUCCU .((((((.(((-(((.(((.(....).)))((((.--------------------------...)))).)))))).)).................((((.(((.(((.......))).))))))).))))......((((((....)))))).......... ( -26.90, z-score = -0.34, R) >droYak2.chrX 8572726 147 - 21770863 AGAGUGGAAAA-UUGAUGAUGGCAACCUCAAAGUGAAAUACUCGUACACCAAAAGCCAUUCAAGGCUUACAACUUUGCCGAAUCUCUAUCCUUUCAGUUGUUCUCCACAAUAAUUGGCGAAAACUCACUCUCAUAC-UUUCCCAAUCCU------------- ...(((((.((-((((.(((((......((((((((.....)).........(((((......)))))...))))))........)))))...))))))....)))))....(((((.((((..............-)))))))))...------------- ( -29.78, z-score = -1.74, R) >droSec1.super_20 930693 146 - 1148123 AAAGUGGAAAA-UCUAUGAUGGCAACCUCAAAGUGAAAUA--CAUCAAAUACAAGCCAUUCAAGGCUUACAUUUUCUCAAAAUCUCUAUCCUUUCAGUUGUUCUCCACUGUAAUUGGCGAAAACUCACUCACAUACUUUUGCCAAUCCU------------- ..((((((.((-(...(((.(....).)))((.(((((..--..........(((((......)))))..((((.....))))........))))).))))).))))))...((((((((((..............))))))))))...------------- ( -28.04, z-score = -2.35, R) >droSim1.chrX 11026508 146 - 17042790 AGAGUGGAAAA-UCUAUGAUGGCAACCUCAAAGUGAAAUA--CAUCAAAUACAAGCCAUUCAAGGCUUACACUUUCUCAAAAUCUCUAUCCUUUCAGUUGUUCUCCACUGUAAUUGGCGAAAACUCACUCACAUACUUUUGCCAAUCCU------------- ..((((((.((-(...(((.((...........(((....--..))).....(((((......))))).....................))..)))...))).))))))...((((((((((..............))))))))))...------------- ( -27.74, z-score = -1.75, R) >consensus AGAGUGGAAAA_UUUAUGAUGGCAACCUCAAAGUGAAAUA__CAUCAAAUACAAGCCAUUCAAGGCUUACAAUUUCUCAAAAUCUCUAUCCUUUCAGUUGUUCUCCACUGUAAUUGGCGAAAACUCACUCACAUAC_UUUGCCAAUCCU_____________ .(((((((((......(((.(....).)))......................(((((......))))).......................))))((((.(((.(((.......))).))))))))))))................................ (-18.74 = -20.14 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:17 2011