| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,334,919 – 14,335,028 |
| Length | 109 |
| Max. P | 0.644781 |
| Location | 14,334,919 – 14,335,028 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.55 |
| Shannon entropy | 0.44796 |
| G+C content | 0.60404 |
| Mean single sequence MFE | -44.85 |
| Consensus MFE | -27.51 |
| Energy contribution | -29.79 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14334919 109 + 22422827 UGGAUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCAGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGCAGUAGGAUGCCCGU .((.(((((((((((((((((((((((((..(((((...)))))(((((.....))))))))))))))...)))))))).....)))))))).(((......))))).. ( -49.40, z-score = -2.00, R) >droEre2.scaffold_4690 6130482 109 - 18748788 UGGAUUUUCGCUUCCUGUCGUUGGCCUGCCAGCGGCCACGCCCCUUUUGGCACACAAAAGUGGGCGGAAGGUGGCGGGAAAGUGGGCGGACGAGGAGCAGCAAGCCCGU ....((..((((.(((((((((((....))))))))..(((((((((((.....)))))).)))))..))).))))..))...((((...(........)...)))).. ( -50.40, z-score = -1.53, R) >droYak2.chrX 8572190 100 + 21770863 UGGAUUUUCGCUUCCUGUCGUUCGUUUGCCAGGGGCCACGCCUCUUUUGGCACACAAAAGAGGGCGGAAGGUGGGCGGAAAGGGGG---------AGGAGGAUGCCCGU .((((((((.((((((.(..((((((..((.....((.(.(((((((((.....)))))))))).))..))..)))))).).))))---------)))))))).))... ( -43.20, z-score = -1.89, R) >droSec1.super_20 930115 109 + 1148123 UGGAUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGAGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCUCGG ..((..(((.((((((....((((((((((((((((...)))))...)))))(((....((.(.(....).).))......)))))))))..)))))).)))...)).. ( -44.40, z-score = -0.71, R) >droSim1.chrX 11025936 109 + 17042790 UGGAUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCUCGG ..((..(((.((((((.(((((((((((((....(((.(((((((((((.....)))))).)))))...)))))))))....)))))))...)))))).)))...)).. ( -47.50, z-score = -1.33, R) >droAna3.scaffold_13248 2037317 106 + 4840945 AGCGCUUCCUGGGGAAGCCGUUCGCCUGCCAG-GACCAUGCCCCUUUUGGCACACAAA--UGGGCGGAAAAGCGCUGGAUGCCAAAAGGCGAAAUGAAGGAAAAAAAAG ((((((((((((.(..((.....)).).))))-))((..((((..((((.....))))--.))))))...))))))...((((....)))).................. ( -34.20, z-score = -0.04, R) >consensus UGGAUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCCCGG ....((((((((.(((.((((((((.((((((((((...)))))...))))).......)))))))).))).))))))))...((((................)))).. (-27.51 = -29.79 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:16 2011