| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,391,217 – 11,391,268 |
| Length | 51 |
| Max. P | 0.692708 |
| Location | 11,391,217 – 11,391,268 |
|---|---|
| Length | 51 |
| Sequences | 11 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 91.65 |
| Shannon entropy | 0.18358 |
| G+C content | 0.45900 |
| Mean single sequence MFE | -13.85 |
| Consensus MFE | -12.45 |
| Energy contribution | -12.49 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11391217 51 - 23011544 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGUCGACCAUUAAAA -...(((((..((((.(((............))).))))..).))))..... ( -11.50, z-score = -0.90, R) >droSim1.chr2L 11199296 51 - 22036055 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGUCGGCCAUUAAAA -...(((((..((((.(((............))).))))...)))))..... ( -15.40, z-score = -1.72, R) >droSec1.super_3 6785563 51 - 7220098 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGUCGGCCAUUAAAA -...(((((..((((.(((............))).))))...)))))..... ( -15.40, z-score = -1.72, R) >droYak2.chr2L 7789076 51 - 22324452 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGUUGGCCAUUAAAA -...(((((..((((.(((............))).))))...)))))..... ( -15.40, z-score = -1.41, R) >droEre2.scaffold_4929 12592884 51 + 26641161 -UUUAUGGCACUGGGCGCCACCCAAUUAAAAGGCACUCGUUGGCCAUUAAAA -...(((((..((((.(((............))).))))...)))))..... ( -14.70, z-score = -1.21, R) >droAna3.scaffold_12916 12100500 52 + 16180835 UUUUAUGGCACUGGGCGCCACCCAAUUAAAAGGCACUCGCUGGCCAUUAAAC (((.(((((..((((.(((............))).))))...))))).))). ( -14.90, z-score = -1.43, R) >dp4.chr4_group3 6842311 51 - 11692001 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGCCGGCCAUUAAAA -...(((((((((((.....)))))).....(((....))).)))))..... ( -17.40, z-score = -1.89, R) >droPer1.super_1 8290261 51 - 10282868 -UGUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGCCGGCCAUUAAAA -...(((((((((((.....)))))).....(((....))).)))))..... ( -17.40, z-score = -1.45, R) >droVir3.scaffold_12963 18069111 51 + 20206255 -UUUAUGGCAAUGGGCGCCACCCAAUUAAAAGGCACUCGAAAGUCAUUAAAU -...(((((..((((.(((............))).))))...)))))..... ( -10.90, z-score = -1.14, R) >droMoj3.scaffold_6500 5048800 51 + 32352404 -UUUAUGGCAAUGGGCGCCACCCAAUUAAAAGGCACUUGAAAGCCAUUAAAA -...(((((..((((.(((............))).))))...)))))..... ( -10.90, z-score = -0.29, R) >droGri2.scaffold_15126 7210800 51 + 8399593 -UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGACACACGACAGUCAUUAAAU -........((((((.....)))))).....(((........)))....... ( -8.50, z-score = -1.08, R) >consensus _UUUAUGGCAUUGGGCGCCACCCAAUUAAAAGGCACUCGUCGGCCAUUAAAA ....(((((..((((.(((............))).))))...)))))..... (-12.45 = -12.49 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:21 2011