| Sequence ID | dm3.chr2L |
|---|---|
| Location | 994,491 – 994,619 |
| Length | 128 |
| Max. P | 0.715207 |
| Location | 994,491 – 994,619 |
|---|---|
| Length | 128 |
| Sequences | 4 |
| Columns | 131 |
| Reading direction | reverse |
| Mean pairwise identity | 64.98 |
| Shannon entropy | 0.56616 |
| G+C content | 0.33288 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -12.79 |
| Energy contribution | -12.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 994491 128 - 23011544 UUUAAUCUG--ACAUUAUAAAUUUGAUAUCAUUAUAUCUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGGAUGGUAAAGGACUGCUAUGCAUGUACAUAUGUACA-UAUAUGCGUGGAAG .....(((.--.((((...((((((((((.......(((....))).((((((....)))).))..))))))))))....))))....))).((.((((((((((((....)))))-....))))))).)) ( -27.80, z-score = -0.78, R) >droSim1.chr2L 978339 122 - 22036055 UUUAAUCUA--UCAUUAUAAAUUUGAUAGCA-UAUACGUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-----CGUAUGUACAUACA-UACAUGCGUGAAAG ......(((--(((.........))))))..-.((((...(((.(((((......))))))))...))))....(((((((((((((......))))-----.((((((....)))-)))))))))))).. ( -32.30, z-score = -3.07, R) >droSec1.super_14 957850 122 - 2068291 UUUAAUCUA--UCAUUAUAAAUUUGAUAGCA-UAUACAUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-----CGUAUGUACAUACA-UACAUGCGUGAAAG ......(((--(((.........))))))..-.((((...(((.(((((......))))))))...))))....(((((((((((((......))))-----.((((((....)))-)))))))))))).. ( -31.20, z-score = -3.01, R) >droWil1.scaffold_180772 6823189 130 + 8906247 GUGAAUAUACGAAAAAAUAGGAUAUAGAAUAUCGAAAGUGUCGAGGAGUAGUACCCAUUAAAACACUCAAUAAAAUAAU-UGUGCCAGGACAGUGGAUUUUUCGCUUUAACAUCUAGUUUUUGAGUUAGUU ........((..((((((.((((....((...((((((.(((...((((.((..........)))))).........((-(((......))))).)))))))))..))...)))).))))))..))..... ( -16.30, z-score = 1.81, R) >consensus UUUAAUCUA__ACAUUAUAAAUUUGAUAGCA_UAUACGUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU_____CGUAUGUACAUACA_UACAUGCGUGAAAG ............................................(((((......)))))..............(((((((((((((......))).......((((....))))....)))))))))).. (-12.79 = -12.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:30 2011