| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,308,165 – 14,308,241 |
| Length | 76 |
| Max. P | 0.972066 |
| Location | 14,308,165 – 14,308,241 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 77.81 |
| Shannon entropy | 0.39431 |
| G+C content | 0.45497 |
| Mean single sequence MFE | -23.56 |
| Consensus MFE | -13.88 |
| Energy contribution | -15.04 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14308165 76 + 22422827 UUUUCCGAAUUAUGCGGCAAGGCCUUGACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGUUG-UAGAAUAGGAAA----- .(((((..(((.(((((((.....((..((((.(((..((...))..)))))))..)).)))))-)).))).)))))----- ( -23.80, z-score = -2.24, R) >droSim1.chrX 11003791 77 + 17042790 UUUUCCGAAUUAUGUGGCAAGGCCUUGACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGAAGAUAUAAUAGGAAA----- .(((((..((((((((((...)))((..((((.(((..((...))..)))))))..))......))))))).)))))----- ( -24.30, z-score = -3.02, R) >droSec1.super_20 908682 76 + 1148123 UUUUCCGAAUUAUGUGGCAAGGCCUUGACUCAUGUGUGCCUCAGGUGCACUGAGGGAAAUAAUG-UAGAAUAGGAAA----- .(((((...(((((((((...)))....((((.(((..((...))..))))))).......)))-)))....)))))----- ( -20.90, z-score = -1.42, R) >droYak2.chrX 8550643 81 + 21770863 UUUCCCGAUUUUUGUGGCGAGCCCUCGACUCAUGUGUGCCUCAGGUGCACUGAGAAAAAUGCUA-UAGAACCGGGAAGGAAA (((((((..(((((((((((....))..((((.(((..((...))..)))))))......))))-))))).))))))).... ( -32.30, z-score = -4.21, R) >droEre2.scaffold_4690 6110078 62 - 18748788 -UUGCCGAUUUUUGAGGCGAGUCCUUGACUCAUGUGUGCCUCAGAUGCACUGAAGAAAAUGGC------------------- -..((((...(((((((((((((...)))))......))))))))..).(....).....)))------------------- ( -16.50, z-score = -1.17, R) >consensus UUUUCCGAAUUAUGUGGCAAGGCCUUGACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGAUG_UAGAAUAGGAAA_____ .(((((.........((.....))....((((.(((((((...)))))))))))..................)))))..... (-13.88 = -15.04 + 1.16)
| Location | 14,308,165 – 14,308,241 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Shannon entropy | 0.39431 |
| G+C content | 0.45497 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -11.36 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14308165 76 - 22422827 -----UUUCCUAUUCUA-CAACAUUUUCCUCAGUGCACCUGAGGCACACAUGAGUCAAGGCCUUGCCGCAUAAUUCGGAAAA -----(((((.......-.........((((((.....)))))).......((((...(((...))).....))))))))). ( -16.80, z-score = -1.49, R) >droSim1.chrX 11003791 77 - 17042790 -----UUUCCUAUUAUAUCUUCAUUUUCCUCAGUGCACCUGAGGCACACAUGAGUCAAGGCCUUGCCACAUAAUUCGGAAAA -----(((((.(((((...(((((...((((((.....)))))).....)))))....(((...)))..)))))..))))). ( -18.30, z-score = -2.46, R) >droSec1.super_20 908682 76 - 1148123 -----UUUCCUAUUCUA-CAUUAUUUCCCUCAGUGCACCUGAGGCACACAUGAGUCAAGGCCUUGCCACAUAAUUCGGAAAA -----(((((.......-(((......((((((.....)))))).....)))......(((...))).........))))). ( -16.00, z-score = -1.54, R) >droYak2.chrX 8550643 81 - 21770863 UUUCCUUCCCGGUUCUA-UAGCAUUUUUCUCAGUGCACCUGAGGCACACAUGAGUCGAGGGCUCGCCACAAAAAUCGGGAAA .....(((((((((...-..((.....((((((.....)))))).......((((.....))))))......))))))))). ( -24.10, z-score = -1.92, R) >droEre2.scaffold_4690 6110078 62 + 18748788 -------------------GCCAUUUUCUUCAGUGCAUCUGAGGCACACAUGAGUCAAGGACUCGCCUCAAAAAUCGGCAA- -------------------((((((((............((((((......(((((...)))))))))))))))).)))..- ( -16.70, z-score = -1.82, R) >consensus _____UUUCCUAUUCUA_CAUCAUUUUCCUCAGUGCACCUGAGGCACACAUGAGUCAAGGCCUUGCCACAUAAUUCGGAAAA .....(((((.................((((((.....))))))..............((.....)).........))))). (-11.36 = -11.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:10 2011