| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,295,203 – 14,295,262 |
| Length | 59 |
| Max. P | 0.815386 |
| Location | 14,295,203 – 14,295,262 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 94.32 |
| Shannon entropy | 0.07782 |
| G+C content | 0.42295 |
| Mean single sequence MFE | -13.07 |
| Consensus MFE | -13.82 |
| Energy contribution | -13.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.66 |
| Structure conservation index | 1.06 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14295203 59 - 22422827 UGUCUUAUAUUCCGUUUGGGAUAAUUUGGCUAGUGAUUAUGAGCUGCCAAUUUUCCGGC .(((...((((((....))))))..(((((.(((........))))))))......))) ( -13.60, z-score = -1.01, R) >droSim1.chrX 10990102 58 - 17042790 UGUCUUAUUUCCCG-UAGGGAUUAUUUGGCUAGUGAUUAUGAGCUGCCAAUUUUCCGGC ..............-..((((....(((((.(((........))))))))..))))... ( -12.80, z-score = -0.49, R) >droSec1.super_20 895917 58 - 1148123 UGUCUUAUUUCCCG-UAGGGAUUAUUUGGCUAGUGAUUAUGAGCUGCCAAUUUUCCGGC ..............-..((((....(((((.(((........))))))))..))))... ( -12.80, z-score = -0.49, R) >consensus UGUCUUAUUUCCCG_UAGGGAUUAUUUGGCUAGUGAUUAUGAGCUGCCAAUUUUCCGGC .(((.....((((....))))....(((((.(((........))))))))......))) (-13.82 = -13.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:07 2011