| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,265,299 – 14,265,404 |
| Length | 105 |
| Max. P | 0.941224 |
| Location | 14,265,299 – 14,265,404 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.22020 |
| G+C content | 0.46966 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -22.49 |
| Energy contribution | -22.72 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14265299 105 - 22422827 UAGUCCUGCGACCAGGCAUCCUGGAUCUACAGCCAUACUCCAUUCAUAUACAUAUGUAUGUACAUAGGUGUGUGUGUUUUUGGGCUUUGCGUCGCUCGCAAACUG ((((..((((((((((...))))).......((.....((((...((((((((((.(((....))).))))))))))...))))....)).....))))).)))) ( -31.30, z-score = -1.42, R) >droSim1.chrX 10958737 97 - 17042790 UAGUCCUGCGACCAGGCAUCCUGGAUCUACCA------UCCAUACAUAUACAUAUGUAUAUAGGU--GUGUGUGUGCUUUUGGGCUUUGCGUCGGUCGCAAACUG ((((..((((((((.(((.((..((..(((((------..(((..((((((....))))))..))--)..)).)))..))..))...))).).))))))).)))) ( -36.50, z-score = -3.26, R) >droSec1.super_20 868924 94 - 1148123 UAGUCCUGCGACCAGGCAUCCUGGAUCUACAGCCA---UCCAUGCAUAUACAUAUGUAUAUA--------CGUGUGCUUUUGUGCUUUUCGUCGGUCGCAAACUG ((((..(((((((.(((....(((((........)---)))).(((((..(((((((....)--------))))))....))))).....)))))))))).)))) ( -31.50, z-score = -3.47, R) >consensus UAGUCCUGCGACCAGGCAUCCUGGAUCUACAGCCA___UCCAUACAUAUACAUAUGUAUAUA__U__GUGUGUGUGCUUUUGGGCUUUGCGUCGGUCGCAAACUG ((((..((((((((((((..(((((.............))))...((((((....))))))..........)..)))))...(((.....)))))))))).)))) (-22.49 = -22.72 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:02 2011