Locus 14591

Sequence ID dm3.chrX
Location 14,264,807 – 14,264,926
Length 119
Max. P 0.621241
window20089

overview

Window 9

Location 14,264,807 – 14,264,926
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 82.07
Shannon entropy 0.29268
G+C content 0.48303
Mean single sequence MFE -38.34
Consensus MFE -26.45
Energy contribution -27.57
Covariance contribution 1.12
Combinations/Pair 1.06
Mean z-score -1.70
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.27
SVM RNA-class probability 0.621241
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14264807 119 - 22422827
AAACGCGUCAUUUGCCAAAUUGCAUGUGGCAUGUGGCAUAUGGCACAAGCUGCUGCUUAAUGCGCCAGCCGGCAGCCAACUAAAUGCGACAUGUACGAGGAGUAAUGAGAGCGAACCAU
...(((.(((((..((....(((((((.((((.((((.....(((.((((....))))..)))(((....))).)))).....)))).)))))))...))...)))))..)))...... ( -43.30, z-score =  -1.69, R)
>droSim1.chrX 10958220 119 - 17042790
AAACGCGUCAUUUGCCAAAUUGCAUGUGGCAUGUGGCAUAUGGCACAAGCUGCUGCUUAAUGCACCAGCCGCCAGCCAACUAAAUGCGACAUGUACGAGUAGUAAUGAGAGCGAACCAU
...(((.(((((........(((((((.((((.((((...((((....((((.(((.....))).)))).)))))))).....)))).)))))))........)))))..)))...... ( -42.99, z-score =  -2.39, R)
>droSec1.super_20 868410 119 - 1148123
AAACGCGUCAUUUGCCAAAUUGCAUGUGGCAUGUGGCAUAUGGCACAAGCUGCUGCUUAAUGCACCAGCCGCUAGCCAACUAAAUGCGACAUGUACGAGUAGUAAUGAGAGCGAACCAU
...(((.(((((........(((((((.((((.((((...((((....((((.(((.....))).)))).)))))))).....)))).)))))))........)))))..)))...... ( -40.69, z-score =  -1.70, R)
>droEre2.scaffold_4690 6070271 91 + 18748788
AAAGCCCUCAUUUGCCAAAUUGCAUGUGCCAUGUGGCAUAC--------UAGCUGCUUCAUGCACCG--------------AAAUGCGGCAUGUACGAGGAGUAAU------GAACUAU
...((((((...(((......))).((((.((((.((((..--------..(.(((.....))).).--------------..)))).)))))))))))).))...------....... ( -26.40, z-score =  -1.02, R)
>consensus
AAACGCGUCAUUUGCCAAAUUGCAUGUGGCAUGUGGCAUAUGGCACAAGCUGCUGCUUAAUGCACCAGCCGCCAGCCAACUAAAUGCGACAUGUACGAGGAGUAAUGAGAGCGAACCAU
..........(((((...(((((.((((.(((((.((((.((((....((((.(((.....))).)))).....)))).....)))).)))))))))....)))))....))))).... (-26.45 = -27.57 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:01 2011