| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,263,095 – 14,263,218 |
| Length | 123 |
| Max. P | 0.821232 |
| Location | 14,263,095 – 14,263,218 |
|---|---|
| Length | 123 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.43391 |
| G+C content | 0.45858 |
| Mean single sequence MFE | -36.24 |
| Consensus MFE | -21.18 |
| Energy contribution | -22.42 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14263095 123 - 22422827 GUGACAGCUCCAU-CACCAUUGGAGCUUUGUGAUGUUAGCGCCAGGACCGAGGUUAAUUACAUAAUAACCUUUGAAAUGUAAUUAAGCGCAGACACCAUGUGUGCGCAUAAGUGUGCGUGUAUG .....(((((((.-......)))))))..(((.((((.((((...(((....)))((((((((.............))))))))..)))).)))).)))(((..(((((....)))))..))). ( -39.02, z-score = -2.36, R) >droPer1.super_343 19525 121 + 20229 UUGACGCGUGGAUCCCCCAUCGGAGAGGAGGAGGGCCAGGGCACUAAUUAAGGC--AUUCAAUUGGCACUGUGAAAGAGCAAAGGAUUGCCCAAAACAUCUAUGCAC-CAAACGUCACUGGAUC .....(((((((((((((..(.....)..)).)))...(((((........(.(--(......)).)..(((......)))......))))).....)))))))).(-((........)))... ( -30.80, z-score = 0.72, R) >droYak2.chrX 8506496 123 - 21770863 GUGACAGCUCCAU-CACCAUUGGAGCUUUGAGAUGAUAGCGCCAGGACCGAGGUUAAUUACAUAAUAACCUUUGAAAUGUAAUUAAGCGCAGACACCGUGCGUGCGCAUAAGUGUGUGUAUGUU (((..(((((((.-......)))))))...........((((...(((....)))((((((((.............))))))))..))))...)))((((((..(((....)))..)))))).. ( -37.12, z-score = -2.25, R) >droSec1.super_20 866804 123 - 1148123 GUGACAGUUCCAU-CACCAUUGGAGCUUUGAGAUGUUAGCGCCAGGACCGAGGUUAAUUACAUAAUAACCUUUGAAAUGUAAUUAAGCGCAGACACCAUGUGUGCGCAUAAGUGCGUGUAUGUG .....(((((((.-......)))))))......((((.((((...(((....)))((((((((.............))))))))..)))).)))).((((((..((((....))))..)))))) ( -35.92, z-score = -1.98, R) >droSim1.chrX 10956037 123 - 17042790 GUGACAGCUCCAU-CACCAUUGGAGCUUUGAGAUGUUAGCGCCAGGACCGAGGUUAAUUACAUAAUAACCUUUGAAAUGUAAUUAAGCGCAGACACCAUGUGUGCGCAUAAGUGCGUGUAUGUG .....(((((((.-......)))))))......((((.((((...(((....)))((((((((.............))))))))..)))).)))).((((((..((((....))))..)))))) ( -38.32, z-score = -2.48, R) >consensus GUGACAGCUCCAU_CACCAUUGGAGCUUUGAGAUGUUAGCGCCAGGACCGAGGUUAAUUACAUAAUAACCUUUGAAAUGUAAUUAAGCGCAGACACCAUGUGUGCGCAUAAGUGUGUGUAUGUG .....(((((((........)))))))...........((((.....(.(((((((.........))))))).)............(((((.((.....)).)))))......))))....... (-21.18 = -22.42 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:43:00 2011