| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,251,524 – 14,251,632 |
| Length | 108 |
| Max. P | 0.894128 |
| Location | 14,251,524 – 14,251,632 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Shannon entropy | 0.35977 |
| G+C content | 0.35954 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.04 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14251524 108 + 22422827 ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUUUC---------ACAACGAUAUUUG--CUACCGAAGGGAGACAGCG .((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).(((.((---------.(((......)))--...((....)).)).))). ( -20.70, z-score = -1.25, R) >droSim1.chrX 10945451 111 + 17042790 ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCCAGAA------CCACAACGAUAUUUG--CUACCGAAGGCAGACAGCG .((....))(((((((...(((((...((....))...)))))...)))))))....((((((((((...)))))))------)))...((...((((--((......))))))...)) ( -32.40, z-score = -4.97, R) >droSec1.super_20 854142 88 + 1148123 ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUAUGGCCAUGCCAGAA---GGCAGACAGCG---------------------------- .((....))(((((((...(((((...((....))...)))))...))))))).(((((((.........)))))))---.((.....)).---------------------------- ( -19.60, z-score = -2.23, R) >droYak2.chrX 8495055 119 + 21770863 ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUUCCACAAGUUCCACAAGGAUAUUUGUGCUACCGAAGGGAGACAGCG .((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).(((((((((((((((....))).)))))))...((....)).)).))). ( -28.60, z-score = -2.10, R) >droEre2.scaffold_4690 6057408 104 - 18748788 ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUGCUGGCCCUGGCCAUGCUGCC-------CCACAAGGACAUUUG--CUACCGCAGGGAG------ .((....))(((((((...(((((...((....))...)))))...)))))))..((((((....)))).))...(-------((....((.......--...))...)))..------ ( -23.60, z-score = -0.73, R) >consensus ACGGAAACGGAAAUAAUUUGUCAUUUUAUUUCUAUUUUAUGAUUAUUUAUUUUAUUCUGGUUCUGGCCAUGCUACCA______CCACAACGAUAUUUG__CUACCGAAGGGAGACAGCG .((....))(((((((...(((((...((....))...)))))...)))))))....((((....)))).................................................. (-14.20 = -14.04 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:57 2011