Locus 14585

Sequence ID	dm3.chrX
Location	14,244,250 – 14,244,303
Length	53
Max. P	0.705496

overview

Window 0

Location	14,244,250 – 14,244,303
Length	53
Sequences	6
Columns	54
Reading direction	reverse
Mean pairwise identity	78.62
Shannon entropy	0.40922
G+C content	0.49982
Mean single sequence MFE	-14.90
Consensus MFE	-8.72
Energy contribution	-10.00
Covariance contribution	1.28
Combinations/Pair	1.25
Mean z-score	-1.59
Structure conservation index	0.59
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.46
SVM RNA-class probability	0.705496
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14244250 53 - 22422827
GCAACUGGGCAUAAUCCCAAGUGCAGCUUAGUUGGUUCCUUCUUCAGCUGGUC-
(((..((((......))))..)))...((((((((........))))))))..- ( -15.60, z-score =  -1.40, R)
>droAna3.scaffold_13266 12868440 52 + 19884421
AAGGUCCGGCGUAAUUAUGGGACCA-CUUAAUUGUGUUCUUGCUGCGAUGAUC-
...((((((((.......(((((.(-(......)))))))))))).)))....- ( -10.81, z-score =  -0.29, R)
>droEre2.scaffold_4690 6050790 53 + 18748788
GCAUUUGGGCGUAAUCCCAAGUGCAGCUUAGUUGGUUCCUUCUUCAGUCGGUC-
(((((((((......))))))))).(((...((((........))))..))).- ( -14.40, z-score =  -2.07, R)
>droYak2.chrX 8487095 54 - 21770863
GCAUCUGGGCAUAAUCCCAAGUGCAGCUUAGUUGGUUCCUUCUUCAGUUGGCGC
(((..((((......))))..))).(((...((((........))))..))).. ( -14.90, z-score =  -0.96, R)
>droSec1.super_20 846955 53 - 1148123
GCAUCUGGGCAUAAUCCCAAGUGCAGUUUAGUUGGUUCCUUCUUCAGCUGGUC-
(((..((((......))))..)))...((((((((........))))))))..- ( -16.90, z-score =  -2.73, R)
>droSim1.chrX 10938270 53 - 17042790
GCAUCUGGGCAUAAUCCCAAGUGCAGCUUAGUUGGUUCCUUCUUCAGCUGGUC-
(((..((((......))))..)))...((((((((........))))))))..- ( -16.80, z-score =  -2.10, R)
>consensus
GCAUCUGGGCAUAAUCCCAAGUGCAGCUUAGUUGGUUCCUUCUUCAGCUGGUC_
((((.((((......)))).))))...((((((((........))))))))... ( -8.72 = -10.00 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:54 2011