| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,239,432 – 14,239,540 |
| Length | 108 |
| Max. P | 0.949306 |
| Location | 14,239,432 – 14,239,540 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.05 |
| Shannon entropy | 0.49471 |
| G+C content | 0.50478 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -20.69 |
| Energy contribution | -19.87 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14239432 108 - 22422827 CAUAGAGAAAAAGUACUAGGAGAAAGGGC-----AAAAACGGAAACGGCAACUGAGAGAAGGGCCUGCAUGUGGUAAUUGCCAUAGGCCCUUAGCGAUUUUCCUUCGUAU-UCG------ ...........(((((.(((((((...((-----.....((....))...........((((((((....(((((....))))))))))))).))..)))))))..))))-)..------ ( -33.80, z-score = -2.73, R) >droAna3.scaffold_13248 1934014 100 - 4840945 ----------------CCAGAUAAAGUGC--GAGGAAAGCCAGAAGGAUGA--AGGACGAAGGACUUCAUGUGGUAAUUGCCAGAGCCCUUUAGCUACCCGCCCUAUCGCAUCGCAUUUU ----------------......(((((((--((((..(((..(((((((((--((..(....).)))))).((((....))))....))))).)))..))((......)).))))))))) ( -31.10, z-score = -2.40, R) >droEre2.scaffold_4690 6046142 107 + 18748788 CCCAGAGAAAAAGUAAUGGGAGGAAGGGC-----AAAGAGGGGAA-AGCGGCUGAGAGAAGGGCCUGCAUGUGGUAAUUGCCACAGGCCCUUAGCGAUUUUCCUUCGCGU-UUG------ ((((............))))...(((.((-----...((((((((-(...((((.....(((((((....(((((....))))))))))))))))..))))))))))).)-)).------ ( -38.50, z-score = -1.96, R) >droYak2.chrX 8482464 113 - 21770863 CCCAGCGAAAAAGUAAUGGGAGAAAGGGCAAAAAAAAAAAGGGGAAAGCGGCUGAGAGAAGGGCCUGCAUGUGGUCAUUGCCACAGGCCCUUAGUGAUUUUCCUUCGCGU-UUA------ ((((((......))..))))...((((((..................((((((........)))).)).((((((....)))))).)))))).((((.......))))..-...------ ( -33.90, z-score = -0.66, R) >droSec1.super_20 842143 108 - 1148123 CCCAGAGAAAAAGUACUAGGAGAAAGGGC-----AAUAACGGGAACGGCAACUGGGAGAAGGACCUGCAUGUGGUAAUUGCCACAGGCCCUUCGCGAUUUUCCUUCGCGU-UCG------ (((((.......(..((.......))..)-----.....((....))....))))).(((((.(((....(((((....)))))))).)))))((((.......))))..-...------ ( -33.80, z-score = -1.00, R) >droSim1.chrX 10933450 108 - 17042790 CCCAGAGAAAAAGUACUAGGAGAAAGGGC-----AAAAACGGGAACGGCAACUGAGAGAAGGGCCUGCAUGUGGUAAUUGCCACAGGCCCUUAGCGAUUUUCCUUCGCGU-UCG------ ......(((...((...(((((((...((-----.....((....))...........((((((((....(((((....))))))))))))).))..)))))))..)).)-)).------ ( -34.20, z-score = -1.35, R) >consensus CCCAGAGAAAAAGUACUAGGAGAAAGGGC_____AAAAACGGGAACGGCAACUGAGAGAAGGGCCUGCAUGUGGUAAUUGCCACAGGCCCUUAGCGAUUUUCCUUCGCGU_UCG______ ..........................................................(((((((((....((((....))))))))))))).((((.......))))............ (-20.69 = -19.87 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:53 2011