| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,237,362 – 14,237,480 |
| Length | 118 |
| Max. P | 0.670019 |
| Location | 14,237,362 – 14,237,480 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.35 |
| Shannon entropy | 0.29504 |
| G+C content | 0.51961 |
| Mean single sequence MFE | -33.77 |
| Consensus MFE | -24.51 |
| Energy contribution | -24.20 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14237362 118 + 22422827 CCAGUCAAGCGGACGAGCAAGUAGCUGUCACGAGCUCGGAAUGCUCGCGGCACCAGGAUC--CAUUACAUCCCAAGCCAAAUCGACGAACAGUGACGAUAGCAUGACAUGGAAAACAAAU (((((((.((.....(((.....)))(((((((((.......))))..(((....((((.--......))))...))).............)))))....)).)))).)))......... ( -34.00, z-score = -1.98, R) >droEre2.scaffold_4690 6044167 118 - 18748788 CCAGUCAAGCGGAGGAGCAAGUAGCUGUCAUGAGCUCGAAAUGCUUGGGGGCCCAGGAUU--CAUUACAUCCCAAGCCAACCCGACGAGCAGUGUCGAUACCAUGACAUGGAGAACAAAU (((.....((......)).......(((((((...((((..(((((((((((...((((.--......))))...)))..)))...)))))...))))...))))))))))......... ( -34.50, z-score = -0.93, R) >droYak2.chrX 8480331 120 + 21770863 CCAGUCAAGCGGACGAGCAAGUAGCUGUCAUGAGCUCGAAAUGCUCGCGGGCCCAGGAUAUACAUUACAUCCCAAUCCAAUCCGACGAGCAGUGUCGAUAGCAUGACAUGGAAAACAAAU (((((((.((.(((.(((.....))))))......((((..((((((((((....((((...............))))..)))).))))))...))))..)).)))).)))......... ( -38.86, z-score = -3.07, R) >droSec1.super_20 840113 97 + 1148123 CCAGUCAAGCGGACGAGCAAGUAGCUGUUAUGAGCUCGCAAUGCUCGCGGCCCCAGGAUC--CAUUACAUCCCA---------------------CGAUAGCAUGACAUGGAUGGCAAAU (((((((.((((.((((((.((((((......)))).))..))))))...))...((((.--......))))..---------------------.....)).)))).)))......... ( -27.70, z-score = -0.42, R) >consensus CCAGUCAAGCGGACGAGCAAGUAGCUGUCAUGAGCUCGAAAUGCUCGCGGCCCCAGGAUC__CAUUACAUCCCAAGCCAA_CCGACGAGCAGUGUCGAUAGCAUGACAUGGAAAACAAAU (((((((.((......)).....((((((.(((((.......)))))........((((.........))))........................)))))).)))).)))......... (-24.51 = -24.20 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:52 2011