| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,234,422 – 14,234,577 |
| Length | 155 |
| Max. P | 0.520676 |
| Location | 14,234,422 – 14,234,577 |
|---|---|
| Length | 155 |
| Sequences | 6 |
| Columns | 163 |
| Reading direction | reverse |
| Mean pairwise identity | 81.97 |
| Shannon entropy | 0.34381 |
| G+C content | 0.45730 |
| Mean single sequence MFE | -48.22 |
| Consensus MFE | -28.29 |
| Energy contribution | -30.88 |
| Covariance contribution | 2.59 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14234422 155 - 22422827 CAUUAAAUGCAAUUGGAAUUAGAAUUUGGCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUUGGGGGGG--------AAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAGAACAAU .......(((((.(((.((((((.....(((......(.(((((((((((((((.(........)(((.((--------(((..((.((.....))..))..)))))...)))))))))))))))))).)..)))..))))))...)))..)))))....... ( -48.10, z-score = -1.43, R) >droSim1.chrX 10928913 161 - 17042790 CAUUAAAUGCAAUUGGAAUUAGAAUUUGGCUUUCGUCUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGGUUGGGGGG--CUAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAGAACAAU .......(((((.(((.((((((.....(((...(((..(((((((((((((((.((......))((((((..(((--(........))((((.....))))))..)).)))))))))))))))))))))).)))..))))))...)))..)))))....... ( -51.50, z-score = -1.49, R) >droSec1.super_20 837224 160 - 1148123 CAUUAAAUGCAAUUGGAAUUAGAAUUUGGCUUUCGUUUGGUCGCCGAAUGUCGCUCUUGUUUUGGGGGGUGGGGGG---AAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAGAACAAU .......(((((.(((.((((((.....(((......(.((((((((((((((((((......)))(((((((.((---((.........)))).)))((.....))..))))))))))))))))))).)..)))..))))))...)))..)))))....... ( -53.30, z-score = -1.84, R) >droYak2.chrX 8477387 152 - 21770863 CAUUAAAUGCAAUUGGAAUUAGAAUUUGGCUUUCGCUUGGUCGCCGAAUGUCGCUCUUUUUGGGGGGA-----------AAACGUCUACAUUCCGCUCGAAUUUUUCAUACUCGCGGCGUUUGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAGAACAAU .......(((((.(((.((((((...((.(..((((.....(((((((((((((.......(((.(((-----------(..........)))).)))((.....))......)))))))))))))))))..).)).))))))...)))..)))))....... ( -46.70, z-score = -1.82, R) >droEre2.scaffold_4690 6041308 163 + 18748788 CAUUAAAUGCAAUUGAAAUUAGAAUUUGGCUUUUGGUUGGUCGCCGAAUGUCGCUCUUUUUCAGGGGGGGGGGGGAGUGAAACAUCUACAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUUGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAUAACAAU ...........((((....((.((..((((..(..((((.(((((((((((((((((......)))((((((.((((((.........)))))).)))((.....))...)))))))))))))))))))))..)((((...))))))))..)).))...)))) ( -52.90, z-score = -2.20, R) >droAna3.scaffold_13248 1926721 122 - 4840945 CAUUAAAUGCAAUUGGAAUUAGAAUUUGG-----GCUUGGC------------------UUUUAGCG------------CCAGAGCCCCAUU--GCCUGA---CCCCUGACCCGCGACACUC-GCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAUAACAAU ......((((((.(((.((((((....((-----(((((((------------------.......)------------))).)))))....--..(((.---((......(((((.....)-)))).....)))))))))))...)))..))))))...... ( -36.80, z-score = -1.54, R) >consensus CAUUAAAUGCAAUUGGAAUUAGAAUUUGGCUUUCGUUUGGUCGCCGAAUGUCGCUCUUUUUUUGGGGGG_G________AAACAUCUGCAUUCCGCUCGAAUUUUUCAUACCCGCGGCGUUCGGCGGCGAUUGGCAGUUUAAUUGGCCAUUUUGUAGAACAAU .......(((((.((((((((((.....(((......(.(((((((((((((((.........(((.(.........................).)))((.....))......))))))))))))))).)..)))..)))))))..)))..)))))....... (-28.29 = -30.88 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:50 2011