| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,226,927 – 14,227,022 |
| Length | 95 |
| Max. P | 0.758081 |
| Location | 14,226,927 – 14,227,022 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.48 |
| Shannon entropy | 0.31139 |
| G+C content | 0.67474 |
| Mean single sequence MFE | -36.92 |
| Consensus MFE | -29.66 |
| Energy contribution | -31.18 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758081 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 14226927 95 + 22422827 CGGUGCC------ACCAGUGGUUCCAAGGGCGGUGGUUAACAGGGGGGGCUGCUGGGUGGUUGGGUGGUGCACAUGGUGCAGUGGUGCGGUGGCGCAAUAA ....(((------(((((..(((((.......((.....))....)))))..)).))))))......((((.(((.(..(....)..).)))))))..... ( -35.60, z-score = -0.71, R) >droEre2.scaffold_4690 6033700 92 - 18748788 CGGUGCCGCCAAAACCAGCGGUUCCAGGGGCGCUGGUUGA---GGGGGGCGGCGGGGUG------GGGUGCACAUGGUGCAGUGGUGCGGUGGUGCGGUGG ((.((((.((..((((((((.((....)).))))))))..---.)).)))).)).....------.(.(((((((.(..(....)..).)).))))).).. ( -42.50, z-score = -2.39, R) >droYak2.chrX 8470099 83 + 21770863 CGGUGCCGCCAAAACCAGUGGUUCCAGGGGCGGUGGUUAA-----AGGGGUCUUGGG--------UGGUGCACAUGGUGCAGUGGUGCGGUGGCGC----- ..((((((((...((((.((...(((...(((.((.((((-----.......)))).--------)).)))...)))..)).))))..))))))))----- ( -31.60, z-score = -0.81, R) >droSec1.super_20 830019 86 + 1148123 CGGUGCCGCCAAAACCAGCGGUUCCAGGGGCGGUGGUUAA-AGGGGGGGCUGCUGGG--------UGGUGCACAUGGUGCAGUGGUGCGGUGGCG------ ....((((((....(((((((((((...(((....)))..-....))))))))))).--------..(..(.(((......))))..))))))).------ ( -38.60, z-score = -1.73, R) >droSim1.chrX 10921389 87 + 17042790 CGGUGCCGCCAAAACCAGUGGUUCCAGGGGCGGUGGUUAA-AGGGGGGGCUGCUGGG--------UGGUGCACAUGGUGCAGUGGUGCGGUGGCGA----- ...(((((((....((((..(((((...(((....)))..-....)))))..)))).--------..(..(.(((......))))..)))))))).----- ( -36.30, z-score = -1.34, R) >consensus CGGUGCCGCCAAAACCAGUGGUUCCAGGGGCGGUGGUUAA_AGGGGGGGCUGCUGGG________UGGUGCACAUGGUGCAGUGGUGCGGUGGCGC_____ ..((((((((....(((((((((((...(((....))).......)))))))))))...........(..(.(((......))))..)))))))))..... (-29.66 = -31.18 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:49 2011