| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,379,246 – 11,379,357 |
| Length | 111 |
| Max. P | 0.623567 |
| Location | 11,379,246 – 11,379,357 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.81 |
| Shannon entropy | 0.18927 |
| G+C content | 0.44324 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -22.22 |
| Energy contribution | -22.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11379246 111 - 23011544 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGAACCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGCUGUC-------- (((.((((((((....)-))))...........((((((((..((((.(((......(((...)))....))).))))((.....))...))))))))...))).)))....-------- ( -27.30, z-score = -1.74, R) >droEre2.scaffold_4929 12576462 111 + 26641161 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGAACCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGCUGUC-------- (((.((((((((....)-))))...........((((((((..((((.(((......(((...)))....))).))))((.....))...))))))))...))).)))....-------- ( -27.30, z-score = -1.74, R) >droYak2.chr2L 7776279 111 - 22324452 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGAACCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGCUGUC-------- (((.((((((((....)-))))...........((((((((..((((.(((......(((...)))....))).))))((.....))...))))))))...))).)))....-------- ( -27.30, z-score = -1.74, R) >droSec1.super_3 6773658 111 - 7220098 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGAACCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGAUGUC-------- ....((((((.(....)-))))))((((..((.((((((((..((((.(((......(((...)))....))).))))((.....))...))))))))...))...))))..-------- ( -26.10, z-score = -1.27, R) >droSim1.chr2L 11185373 111 - 22036055 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGAACCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGCUGUC-------- (((.((((((((....)-))))...........((((((((..((((.(((......(((...)))....))).))))((.....))...))))))))...))).)))....-------- ( -27.30, z-score = -1.74, R) >dp4.chr4_group3 6824418 103 - 11692001 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGGCCCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG-UUUUUGCGCUUGAUUGUCUUCUGUC--------------- (...((((((.(....)-))))))...).....((((((((..(((..(((.((....)).))).(((..((......)-)..))).))))))))))).......--------------- ( -25.10, z-score = -1.52, R) >droPer1.super_1 8272298 103 - 10282868 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGGCCCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG-UUUUUGCGCUUGAUUGUCUUCUGUC--------------- (...((((((.(....)-))))))...).....((((((((..(((..(((.((....)).))).(((..((......)-)..))).))))))))))).......--------------- ( -25.10, z-score = -1.52, R) >droWil1.scaffold_181038 347755 109 - 637489 GUAUGCAAAAAGGCAACUUUUUGUUAUCUUCAUGACAAUCAUUGGCUUGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG-UUUUUGCGCUUGAUUGUCUUCUGGUCCCUC---------- (...((((((((....))))))))...).....((((((((..(((.((((.((....)).))))(((..((......)-)..))).)))))))))))............---------- ( -30.50, z-score = -3.09, R) >droAna3.scaffold_12916 12089120 119 + 16180835 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCACUGGCCCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCGCUUUUUGCGCUUGAUUGUCUUCUGUCUGCGGGAUAUAUGUA ...(((((((((....)-))))..((((.....((((((((.((((((((.....))).).))))............(((.....)))..))))))))..(((....)))))))..)))) ( -30.40, z-score = -0.95, R) >droVir3.scaffold_12963 2146697 105 - 20206255 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGGCCCGGCUCAUCUGUGUGCCACAAUUGCUCGUUCG--UUUUGCGCUUGAUUGUCUUCUGCUGUC------------ ....((((((((....)-))))...........((((((((..(((..(((.((....)).)))......((.......--....)))))))))))))...)))....------------ ( -26.30, z-score = -1.44, R) >droMoj3.scaffold_6500 27319723 105 - 32352404 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGGCCUGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG--UUUUGCGCUUGAUUGUCUUCAGCUGUC------------ ....((.(((((....)-))))...........((((((((..(((.((((.((....)).)))).....((.......--....)))))))))))))....))....------------ ( -25.90, z-score = -1.02, R) >droGri2.scaffold_15126 1201509 105 - 8399593 GUAUGCAAAAAGGCAAC-UUUUGUUAUCUUCAUGACAAUCAUUGGCCUGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG--UUUUGCGCUUGAUUGUCUUCAGAUGUG------------ ....((((((.(....)-))))))(((((....((((((((..(((.((((.((....)).)))).....((.......--....)))))))))))))...)))))..------------ ( -27.10, z-score = -1.25, R) >consensus GUAUGCAAAAAGGCAAC_UUUUGUUAUCUUCAUGACAAUCAUUGGCCCGGCUCAUCCGUGUGCCACAAUUGCUCGUUCG_UUUUUGCGCUUGAUUGUCUUCUGUCUGCUG__________ (...((((((.(....).))))))...).....((((((((.......(((.((....)).)))......((.((.........)).)).))))))))...................... (-22.22 = -22.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:18 2011