| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,226,029 – 14,226,082 |
| Length | 53 |
| Max. P | 0.554769 |
| Location | 14,226,029 – 14,226,082 |
|---|---|
| Length | 53 |
| Sequences | 8 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Shannon entropy | 0.49560 |
| G+C content | 0.40293 |
| Mean single sequence MFE | -11.40 |
| Consensus MFE | -6.72 |
| Energy contribution | -6.69 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14226029 53 + 22422827 -------CCGCAGCACUUUAAUGGCCAUUGUUAUGCCCGUUAUGUUGAUUAUAAGCUUCU -------...(((((...((((((.(((....))).)))))))))))............. ( -10.70, z-score = -1.04, R) >droSim1.chrX 10920514 53 + 17042790 -------CCGCAGCACUUUAAUGGCCAUUGUUAUGCCCGUUAUGUUGAUUAUAAGCUUCU -------...(((((...((((((.(((....))).)))))))))))............. ( -10.70, z-score = -1.04, R) >droSec1.super_20 828861 53 + 1148123 -------CCGCAGCACUUUAAUGGCCAUUGUUAUGCCCGUUAUGUUGAUUAUAAGCUUCU -------...(((((...((((((.(((....))).)))))))))))............. ( -10.70, z-score = -1.04, R) >droYak2.chrX 8469183 53 + 21770863 -------CCGCAGCACUUUAAUGGCCAUUGUUAUGCCCGUUAUGUUGAUUAUAAGCUUCU -------...(((((...((((((.(((....))).)))))))))))............. ( -10.70, z-score = -1.04, R) >droEre2.scaffold_4690 6032720 53 - 18748788 -------CCGCAGCACUUUAAUGGCCAUUGUUAUGACCGUUAUGUUGAUUAUAAGCUUCU -------...(((((...((((((.(((....))).)))))))))))............. ( -10.70, z-score = -1.29, R) >droAna3.scaffold_13248 1917585 52 + 4840945 -------GGGCAGC-CUUUAAUGGCCAUUGUUAUGGCCGUUAUGCUGAUUAUAAGCCCCU -------(((((((-...((((((((((....)))))))))).)))........)))).. ( -21.80, z-score = -3.07, R) >droWil1.scaffold_180588 28115 58 + 1294757 AUGUUUUCUUAAGCCAUAAAAAAAUGA--GUUGCUUUGCUUAAGUUUGGACCAAGCAACU ..........................(--(((((((.(((.......)).).)))))))) ( -9.10, z-score = -0.03, R) >droGri2.scaffold_15203 2845697 53 - 11997470 -------CAGUACCAAUUUAUGGGUCAUUGUUGUGUCUGUUACGCUGAUUAUAAGCUUAU -------(((.((((((..(((...))).)))).)))))....(((.......))).... ( -6.80, z-score = 0.69, R) >consensus _______CCGCAGCACUUUAAUGGCCAUUGUUAUGCCCGUUAUGUUGAUUAUAAGCUUCU ..........((((....((((((.(((....))).)))))).))))............. ( -6.72 = -6.69 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:46 2011