| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,224,709 – 14,224,819 |
| Length | 110 |
| Max. P | 0.655366 |
| Location | 14,224,709 – 14,224,819 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.40 |
| Shannon entropy | 0.25674 |
| G+C content | 0.33947 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -16.44 |
| Energy contribution | -17.16 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14224709 110 + 22422827 GUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUAGCGAAAAGGUUUGAGAGUGCUAUAAAAUGUAGCUCGAAUUAUUUAAAUUUAAUAUGUGUAUGAUUAAAG ((((((...((.(((((((((........))))))))).)).))(((..(((((((..(((........))).)))))))..))).............))))........ ( -22.30, z-score = -1.44, R) >droSim1.chrX 10919239 109 + 17042790 GUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAUGGUUUGA-AGUGCUAUAAAAUGUAACUCAAAUUAUUUCCAUUUAAUUAGUGUAUAAUUCAAG ((((((((((....(((((((........)))))))))))))(((((((((((((-..(((........)))..)))))))))))))...........))))........ ( -32.50, z-score = -4.66, R) >droSec1.super_20 827604 109 + 1148123 GUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAAGGUUUGA-AGUGCCAUAAAAUGUAGCUCGAAUUAUUUCAAUUUAAUAAGUGUAUGAUUCAAG ...(((((((....(((((((........))))))))))))))((((..((((((-.((..(((...)))..))))))))..))))........................ ( -25.60, z-score = -1.90, R) >droYak2.chrX 8467985 107 + 21770863 GUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGGAUGUCUUGGAAAAAGGUUUAAAAAUGCUAUUAAAUGUAGCUCGAAUUAUUUGCAUUUAAUAAGUGUAUAAUGU--- ...((((((((....((((((........))))))))))))))..............((((((((((((((((..........))))))))))).))))).......--- ( -25.60, z-score = -2.37, R) >droEre2.scaffold_4690 6031492 107 - 18748788 GUGCAGGGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGAAAAAGGUUUAAAAAUGCAAUAACAUGUAGCUCGAAUUGUUUGCGAAUUAUAAAUGUAUAAUGC--- ..(((...(((((((((((((........)))))((..(((.....)))..)).....(((((..(((............))))))))......))))))))..)))--- ( -18.40, z-score = 0.27, R) >consensus GUGCCGAGAUAUAUUUUCUGGAUCACUCCCCAGAAAGUCUUGGGAAAAGGUUUGA_AGUGCUAUAAAAUGUAGCUCGAAUUAUUUCCAUUUAAUAAGUGUAUAAUUCAAG ...(((((((....(((((((........)))))))))))))).(((..((((((...(((........)))..))))))..)))......................... (-16.44 = -17.16 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:45 2011