| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,224,600 – 14,224,661 |
| Length | 61 |
| Max. P | 0.891673 |
| Location | 14,224,600 – 14,224,661 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 78.24 |
| Shannon entropy | 0.42597 |
| G+C content | 0.48710 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -7.05 |
| Energy contribution | -8.15 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14224600 61 - 22422827 CCAUAUCCCUUGGCUUAUUAUAC-----AAGGAGCCAACCAACCGUAACUCAGAC-ACCGCUGAGAC .........(((((((.......-----...)))))))..........(((((..-....))))).. ( -13.50, z-score = -2.89, R) >droSim1.chrX 10919131 61 - 17042790 CCAUAUCCCUUGGCUUAUUAUAC-----AAGGAGCCAACAAACCGUAACUCAGAC-ACCGCUGAGAC .........(((((((.......-----...)))))))..........(((((..-....))))).. ( -13.50, z-score = -2.93, R) >droYak2.chrX 8467876 61 - 21770863 CCAUAUCCCUUGGCUUAUUAUAC-----AAGGAGCCAACAAACCGUAACUCAGAC-ACCGCUGAGAC .........(((((((.......-----...)))))))..........(((((..-....))))).. ( -13.50, z-score = -2.93, R) >droEre2.scaffold_4690 6031383 61 + 18748788 CCAUAUCCCUUGGCUUAUUAUAC-----AAGGAGCCAACAAACCGUAACUCAGAC-ACCGCUGAGAC .........(((((((.......-----...)))))))..........(((((..-....))))).. ( -13.50, z-score = -2.93, R) >droAna3.scaffold_13248 1916789 66 - 4840945 CCAUAUCCCUUAGCUUAUUAUACGAGGAGAGGAGCCAACAAACCGUAACUCAGAC-ACCGCUGAGAC .....((((((..(.........)..))).)))...............(((((..-....))))).. ( -10.70, z-score = -0.99, R) >dp4.chrXL_group1e 7484220 56 + 12523060 CCAUAUCCUCGGGCUUAUUAUAU-----GGCGAGCCAACAAACCGUAACUCAGAC-ACCGCU----- .........((((((........-----)))(((...((.....))..)))....-.)))..----- ( -7.40, z-score = 0.53, R) >droPer1.super_35 942152 54 + 973955 CUGCAGCUUGCAUCUUCCUCU-------GACCAGAUA--CAGCUACAGCUAAGGCUGCAGCUA---- (((((((((.........(((-------....)))..--.(((....))).)))))))))...---- ( -16.60, z-score = -0.75, R) >droSec1.super_20 827490 61 - 1148123 CCAUAUCCCUUGGCUUAUUAUAC-----AAGGAGCCAACAAACCGUAACUCAGAC-ACCGCUGAGAC .........(((((((.......-----...)))))))..........(((((..-....))))).. ( -13.50, z-score = -2.93, R) >consensus CCAUAUCCCUUGGCUUAUUAUAC_____AAGGAGCCAACAAACCGUAACUCAGAC_ACCGCUGAGAC .........(((((((...............)))))))..........(((((.......))))).. ( -7.05 = -8.15 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:44 2011