| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,216,840 – 14,216,941 |
| Length | 101 |
| Max. P | 0.710480 |
| Location | 14,216,840 – 14,216,941 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.83 |
| Shannon entropy | 0.41113 |
| G+C content | 0.48093 |
| Mean single sequence MFE | -32.99 |
| Consensus MFE | -18.60 |
| Energy contribution | -20.56 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14216840 101 + 22422827 CUGGCGAAAAAGUGAAAUCCAGUUGAUUGCAGUUUGCAGUUGGCAGC-----AGCUGCAGAGCGAA---AGCGAAAAGCUUAGCAUACUUUU--GGGCCUGCCCCAAUAAC ..(((..(((((((.......((..(((((.....)))))..)).((-----((((.....((...---.))....))))..)).)))))))--..)))............ ( -33.40, z-score = -1.50, R) >droSec1.super_20 817224 101 + 1148123 CGGGCGAAAAAGUGAAAUCCAGUUGAUUGCAGUUUGCAGUUGGCAGC-----AGCUGCAGAGCGAA---AGCGAAAAGCUUAGCAUACUUUU--GGGCCUGCCCCAAUAAC (((((..(((((((.......((..(((((.....)))))..)).((-----((((.....((...---.))....))))..)).)))))))--..))))).......... ( -36.10, z-score = -2.26, R) >droYak2.chrX 8460105 101 + 21770863 CAGGCGGAAAAGUGAAAUCCAGUUGAUUGCAGUUUGCAGUCGGCAGC-----AGCUGCGGAGCGAA---AGCGAAAAGCUUACCAUACUUUU--GGGCCUGCCCCAAUAAC (((((..(((((((...(((.(((((((((.....))))))))).((-----....)))))((...---.)).............)))))))--..))))).......... ( -36.70, z-score = -2.37, R) >droEre2.scaffold_4690 6023577 104 - 18748788 CAGGCGGAAAAGUGAAAUCCAGUUGAUUGCAAUUCGCUGGCAGCAGCUG--CAGCUGCAGAGCGAA---AGCGAAAAGCUUAGCAUACUUUU--GGGCCUGCCCCAAUAAC (((((..(((((((......((((..((((..((((((.(((((.....--..)))))..))))))---.))))..)))).....)))))))--..))))).......... ( -36.30, z-score = -1.36, R) >droAna3.scaffold_13248 1909097 110 + 4840945 -AGGAUAAAGCUCCAAAACCCAAAAAAUCCAAUGCAAAAGUGAAAUGUAAACAAUGAGAAAGUGCAGUCAGUGGAAAGUGUAGCAUACUGUUCGGGGCCUGUCCCAAUAAU -.(((((..(((((.............((((.((((.........((....)).........)))).....)))).(((((...)))))....))))).)))))....... ( -22.47, z-score = -1.01, R) >consensus CAGGCGAAAAAGUGAAAUCCAGUUGAUUGCAGUUUGCAGUUGGCAGC_____AGCUGCAGAGCGAA___AGCGAAAAGCUUAGCAUACUUUU__GGGCCUGCCCCAAUAAC (((((..(((((((......((((..((((..(((((..((.(((((......))))).)))))))....))))..)))).....)))))))....))))).......... (-18.60 = -20.56 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:41 2011