| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,214,562 – 14,214,675 |
| Length | 113 |
| Max. P | 0.940822 |
| Location | 14,214,562 – 14,214,675 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Shannon entropy | 0.25192 |
| G+C content | 0.27002 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14214562 113 - 22422827 AUUUCUGAACUGCAGCUAAAAGUCCAGUCGUUUCUGAUUCGAUUAUUAGCUCAUUAAAAUAAAAUUAUAAUGACUGAAUGGCUAAACAACCUAAUUAACAUUAAAUUUGUUUC ......((((((.((((((.((((.(((((....))))).)))).))))))))........(((((.(((((.......((........)).......)))))))))))))). ( -17.04, z-score = -0.96, R) >droSim1.chrX 10906417 93 - 17042790 --------------------AUUUCCAUCGUUUUUGAUUCGAUUAUUAGCUCAUUAAAAUAAAAUUAUAAUGACUGAAUGGCUAAACAGCCUAAUUAACAUUAAAUUUGAUGG --------------------....((((((..(((((((..((((((((.((((((.(((...))).))))))))))..((((....))))))))..).))))))..)))))) ( -21.50, z-score = -4.00, R) >droSec1.super_20 814845 93 - 1148123 --------------------AUUUCCAUCGUUUUUGAUUCGAUUAUUAGCUCGUUAAAAUAAAAUUAUAAUGACUGAAUGGCUAAACAGCCUAAUUAACAUUAAAUUUCAUGG --------------------....((((.(..(((((((..((((((((.((((((.(((...))).))))))))))..((((....))))))))..).))))))..).)))) ( -15.60, z-score = -1.76, R) >consensus ____________________AUUUCCAUCGUUUUUGAUUCGAUUAUUAGCUCAUUAAAAUAAAAUUAUAAUGACUGAAUGGCUAAACAGCCUAAUUAACAUUAAAUUUGAUGG ........................((((((..(((((((..((((((((.((((((.(((...))).))))))))))..((((....))))))))..).))))))..)))))) (-13.92 = -14.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:40 2011