| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,212,163 – 14,212,272 |
| Length | 109 |
| Max. P | 0.513946 |
| Location | 14,212,163 – 14,212,272 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 86.32 |
| Shannon entropy | 0.23890 |
| G+C content | 0.43302 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -23.78 |
| Energy contribution | -24.02 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14212163 109 - 22422827 AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACA-AUUGCGCGACUGCAGAGCGCAACUUCUU--CGCGAAACGCGAAAAGG--GGUUGUGGGUGUUUAAAAGUGGGUGUUC---- ......((((((((..((((((((((((.((((.(.-.....))))).)))))))((((((((((--((((...)))))..)))--)))))).)))))....))))))))....---- ( -32.40, z-score = -1.93, R) >droSim1.chrU 10181474 109 - 15797150 AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACA-AUUGCGCGACUGCAGAGCGCAACUUCUU--CGCGAAACGCGAAAAGG--GGUUGUGGGUGUUUAAAAGUGGGUGUUC---- ......((((((((..((((((((((((.((((.(.-.....))))).)))))))((((((((((--((((...)))))..)))--)))))).)))))....))))))))....---- ( -32.40, z-score = -1.93, R) >droSec1.super_3719 4684 96 + 4784 AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACACCUUUCGCGACUGCAGAGCGCAACUUCUU--CGCGAAACGCGAAAAGG--GGUUGUGGGUGUUC------------------ .((((((.....))))))...(((((((.((((.(.......))))).)))))))((((((((((--((((...)))))..)))--))))))........------------------ ( -31.00, z-score = -2.67, R) >droYak2.chrX 8454921 117 - 21770863 AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACA-AUUGCGCGACUGCAGAGCGCAACUUCUUCGCGCGAGUGGCGAAAGGGGUGCUUGUGGGUGUUUAAAACUGGGUGGGUGUUC .((((((.....))))))..............((((-.(..(.((.(..((.(((((..((((.((((....)))).).)))..)))))))..)((.......)))).)..).)))). ( -30.40, z-score = 0.19, R) >droEre2.scaffold_4690 6018830 109 + 18748788 AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACA-AUUGCGCGACUACAGAGCGCAACUUCUU--CGCGAGAGGCGCUAAGG--GGUUGUGGGUGUUUAAAAUUGGGUGUUC---- .((((((.....))))))...((((((..((((.(.-.....)))))..))))))((((((((((--.(((.....))).))))--))))))(((..((((....))))..)))---- ( -29.20, z-score = -1.14, R) >consensus AAUACAAUUUAUUUGUAUAUUGUUUUGCUGUUGACA_AUUGCGCGACUGCAGAGCGCAACUUCUU__CGCGAAACGCGAAAAGG__GGUUGUGGGUGUUUAAAAGUGGGUGUUC____ .((((((.....))))))...(((((((.((((.(.......))))).)))))))((((((((((..(((.....)))..))))..)))))).......................... (-23.78 = -24.02 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:40 2011