Locus 14570

Sequence ID dm3.chrX
Location 14,206,652 – 14,206,769
Length 117
Max. P 0.997637
window20060

overview

Window 0

Location 14,206,652 – 14,206,769
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 96.58
Shannon entropy 0.04709
G+C content 0.44729
Mean single sequence MFE -37.37
Consensus MFE -36.22
Energy contribution -36.67
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -3.51
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.14
SVM RNA-class probability 0.997637
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14206652 117 - 22422827
UUUUCACAUUUUUCUAAUGGCCAGACAAGCAAUAUUGGUCGAGUGGCAAUGCCCUCGGCCUACCAAUUGCAUUGGUCACAGAAAUCUCAGAAAUUCCUGCAGCCAUUCAUUCGACAU
.((((.....(((((..(((((((....(((((...(((((((.(((...)))))))))).....))))).))))))).))))).....))))........................ ( -31.50, z-score =  -2.23, R)
>droSim1.chrX_random 3805585 117 - 5698898
GUUUCCCAUUUUUCUGAUGGCCAAACAAGCAAUAUUGGUCGAGUGGCAAUGCCCUCGGCCUACCAAUUGCAUUGGUCACAGAAAUCUCGGAAAUUCCUGCAGCUAUUCAUUCGACAU
((((((....((((((.(((((((....(((((...(((((((.(((...)))))))))).....))))).)))))))))))))....))))))....................... ( -40.30, z-score =  -4.16, R)
>droSec1.super_20 802473 117 - 1148123
GUUUCCCAUUUUUCUGAUGGCCAAACAAGCAAUAUUGGUCGAGUGGCAAUGCCCUCGGCCUACCAAUUGCAUUGGUCACAGAAAUCUCGGAAAUUCCUGCAGCUAUUCAUUCGACAU
((((((....((((((.(((((((....(((((...(((((((.(((...)))))))))).....))))).)))))))))))))....))))))....................... ( -40.30, z-score =  -4.16, R)
>consensus
GUUUCCCAUUUUUCUGAUGGCCAAACAAGCAAUAUUGGUCGAGUGGCAAUGCCCUCGGCCUACCAAUUGCAUUGGUCACAGAAAUCUCGGAAAUUCCUGCAGCUAUUCAUUCGACAU
.(((((....((((((.(((((((....(((((...(((((((.(((...)))))))))).....))))).)))))))))))))....)))))........................ (-36.22 = -36.67 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:37 2011