| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,193,305 – 14,193,409 |
| Length | 104 |
| Max. P | 0.629078 |
| Location | 14,193,305 – 14,193,409 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.84 |
| Shannon entropy | 0.34529 |
| G+C content | 0.37387 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -13.00 |
| Energy contribution | -14.03 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14193305 104 + 22422827 GCAAGGAUAAAAUUUACCCGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGGCAAAA--AAUAUAUCAAAAUAUGUUGACAAA ((...(((((.......(((....)))..((((((....))))))...........)))))...))..(((((((((...--..............))))))))). ( -27.73, z-score = -2.66, R) >droSim1.chrX_random 3798123 102 + 5698898 GCAAGGAUACAACUUACACGAAAUCGGUAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGG--AAA--AAUAUAUCAAAAUAUGUUGACAAA ((...((((.....(((.((....)))))((((((....))))))............))))...))..(((((((--...--.((((......)))).))))))). ( -24.20, z-score = -2.28, R) >droSec1.super_20 795248 102 + 1148123 GCAAGGAUACAACUUACACGAAAUCGGUAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGG--AAA--AAUAUAUCAAAAUAUGUUGACAAA ((...((((.....(((.((....)))))((((((....))))))............))))...))..(((((((--...--.((((......)))).))))))). ( -24.20, z-score = -2.28, R) >droYak2.chrX 8445245 102 + 21770863 GCAAGGAUAAAAUUUAAACGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAUAUUAUCACGGUGCUUGUCGG--AAA--AAUAUAUCAAAAUAUGUUGACAAA (((..(((((........((....))(((((((((....))))))....)))....)))))....)))(((((((--...--.((((......)))).))))))). ( -24.90, z-score = -2.38, R) >droEre2.scaffold_4690 6010560 101 - 18748788 GCAAGGAUGAAAUUUACUCGAAAUCGGCAGCCGCAUCUUUGUGGUGAAAUGCAA-AUUAUCAAGAUGCUUGUUGG--AAA--AACGUAUCAAAAUACGUUGACAAA (((..(((((........((....))(((((((((....))))))....)))..-.)))))....)))...(((.--...--(((((((....)))))))..))). ( -22.80, z-score = -1.03, R) >droWil1.scaffold_180588 10373 99 + 1294757 -----GCCAGCAUAUG-GCAGCAUCCGUGCCCACAUCUUUGCGGC-AAAUGGAAAAUUAUCAAGACGCAUAUCGUAAAAACAAACAUGUGAAAAUAUGAAGAUAAA -----((((.....))-))....(((.((((((......)).)))-)...)))...(((((...(((.....))).........(((((....)))))..))))). ( -23.40, z-score = -1.75, R) >consensus GCAAGGAUAAAAUUUACACGAAAUCGGCAGCCGCAUCUUUGUGGCAAAAUGCAAAAUUAUCAAGGCGCUUGUCGG__AAA__AAUAUAUCAAAAUAUGUUGACAAA ((...(((((........((....))...((((((....))))))...........)))))...))..(((((.........(((((((....)))))))))))). (-13.00 = -14.03 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:36 2011