| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,191,369 – 14,191,440 |
| Length | 71 |
| Max. P | 0.641353 |
| Location | 14,191,369 – 14,191,440 |
|---|---|
| Length | 71 |
| Sequences | 9 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.40780 |
| G+C content | 0.48561 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -11.86 |
| Energy contribution | -11.31 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14191369 71 + 22422827 GGGUCACGACUGGUUUUUGAUUAGCUGC---GAUUGGUCGCAGUUGUUGACGGCUGUUUGAUGGCUAAGUAAAA--- .((((((((..(((..(..((.((((((---((....))))))))))..)..)))..))).)))))........--- ( -23.90, z-score = -2.97, R) >droSim1.chrX_random 3796254 71 + 5698898 GGGUCACGACUGGUUUUUGAUUAGCUGC---GAUUGGUCGCAGUUGUUGACGUCUGUUUGAUGGCCAAGUAAAA--- .((((((((..((...(..((.((((((---((....))))))))))..)...))..))).)))))........--- ( -22.40, z-score = -2.09, R) >droSec1.super_20 793329 71 + 1148123 GGGUCACGACUGGUUUUUGAUUAGCUGC---GAUUGGUCGCAGUUGUUGACGUCUGUUUGAUGGCCAAGUAAAA--- .((((((((..((...(..((.((((((---((....))))))))))..)...))..))).)))))........--- ( -22.40, z-score = -2.09, R) >droEre2.scaffold_4690 6008599 70 - 18748788 -GGUCACGACUGGUUUUUGAUUAGCUGC---GAUUGGUCGCAGUUGCUGACGGCUGCUUGAUGGCUCAGAAAAA--- -((((((((..(((..((...(((((((---((....)))))))))..))..)))..))).)))))........--- ( -20.00, z-score = -0.59, R) >droYak2.chrX 8442446 71 + 21770863 GGGUCACGACUGGUUUUUGAUUAGCUGC---GAUUGGGCGCAGUUGCUGACGGCUGUUUGAUGGUCUAGUAAAA--- ((..(((((..(((..((...(((((((---(......))))))))..))..)))..))).))..)).......--- ( -19.20, z-score = -0.66, R) >droAna3.scaffold_13248 1896794 71 + 4840945 GGGUCACGACUGGGCUUUGAUUAGCUGC---GAUUGGUCGCAGUUGUUGACGGUUUCUUGACGCCAAAAUAAAA--- ((((((.((...(((((..((.((((((---((....))))))))))..).)))))).)))).)).........--- ( -22.20, z-score = -1.90, R) >dp4.chrXL_group1e 7455034 77 - 12523060 GGGCCACGACCAGGCUUUGAUUAGCUGCUGCGAUUGGUCGCAGUUGUUGAUGGCUGCUUGACGGCCGGAAAAUAAAA .((((.....(((((..(.((((((.(((((((....))))))).)))))).)..)))))..))))........... ( -31.00, z-score = -2.98, R) >droPer1.super_334 4246 77 - 25212 GGGCCACGACCAGGCUUUGAUUAGCUGCUGCGAUUGGUCGCAGUUGUUGAUGGCUGCUUGACGGCCGGAAAAUAAAA .((((.....(((((..(.((((((.(((((((....))))))).)))))).)..)))))..))))........... ( -31.00, z-score = -2.98, R) >droWil1.scaffold_180588 8962 66 + 1294757 AGGUCAUGACCAGCUUUUGAUUAGUUGC---GAUUGGUCGCAGUUGUUGAUGGAGGCAACAAAAUCCAA-------- .(((....))).((((((.(((((((((---((....))))))...)))))))))))............-------- ( -15.70, z-score = -0.33, R) >consensus GGGUCACGACUGGUUUUUGAUUAGCUGC___GAUUGGUCGCAGUUGUUGACGGCUGCUUGAUGGCCAAGUAAAA___ .((((..((((((....................))))))(((((((....))))))).....))))........... (-11.86 = -11.31 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:35 2011