| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,186,097 – 14,186,189 |
| Length | 92 |
| Max. P | 0.792291 |
| Location | 14,186,097 – 14,186,189 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 68.47 |
| Shannon entropy | 0.43738 |
| G+C content | 0.48551 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.04 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14186097 92 - 22422827 UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCUGAGCUUUUUUAGCCAGAUGGCUUCC----AUCGUACAGUUAGCUAACAGAAAA----GGUUUAAAC ...(((((((.......))))))).........(((((((((((.....(((((...))----))).....(((....))).)))))----))))))... ( -25.50, z-score = -1.82, R) >droSim1.chrX 10899530 99 - 17042790 UGCGGCCAUGCCAUUACCAUGGCCAACUUGACCCUCGC-UUUUUAGCCAGAUGGCUGCCAGUAAUCGCACAAUUAGCUAACAAAAAAAAAUGGGUUAAAC ...(((((((.......)))))))...(((((((..((-(...(((((....)))))..)))....((.......))..............))))))).. ( -29.00, z-score = -2.19, R) >droEre2.scaffold_4690 6003544 77 + 18748788 UGCGGCCAUGCCAUGGCGAUGGCCAACUUA------------------AGUUGGCUUUCAGUUAUCGCGCACUUGGCUAACAGAAG-----CGGUUGGAC ..(((((..((.(((((((.(((((((...------------------.))))))).)).))))).))((..(((.....)))..)-----))))))... ( -28.10, z-score = -1.63, R) >consensus UGCGGCCAUGCCAUUACCAUGGCCAACUUGACC___GC_UUUUUAGCCAGAUGGCUUCCAGU_AUCGCACAAUUAGCUAACAGAAAA____GGGUUAAAC ...(((((((.......))))))).........................(.(((((..................))))).)................... (-13.92 = -14.04 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:34 2011