| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,165,319 – 14,165,374 |
| Length | 55 |
| Max. P | 0.939680 |
| Location | 14,165,319 – 14,165,374 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 96.97 |
| Shannon entropy | 0.05909 |
| G+C content | 0.64545 |
| Mean single sequence MFE | -24.32 |
| Consensus MFE | -23.38 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14165319 55 - 22422827 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). ( -25.30, z-score = -2.05, R) >droSim1.chrX 10882461 55 - 17042790 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). ( -25.30, z-score = -2.05, R) >droSec1.super_20 768184 55 - 1148123 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). ( -25.30, z-score = -2.05, R) >droYak2.chrX 8417847 55 - 21770863 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). ( -25.30, z-score = -2.05, R) >droEre2.scaffold_4690 5983862 55 + 18748788 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUUUGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). ( -23.20, z-score = -1.59, R) >droAna3.scaffold_13248 1873157 55 - 4840945 AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGAUGGGGCAGAGCCCG .(((((.(((....)))))))).((((((..(((.((.....))))).)).)))) ( -21.50, z-score = -1.54, R) >consensus AUUGGUAGUGGACACACAUCAAACGGGUCGCGCCGCCUCGGUGGGGCAGGGCCCA .(((((.(((....))))))))..(((((((.((((....)))).))..))))). (-23.38 = -23.72 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:33 2011