| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,116,276 – 14,116,395 |
| Length | 119 |
| Max. P | 0.766806 |
| Location | 14,116,276 – 14,116,395 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.03 |
| Shannon entropy | 0.19197 |
| G+C content | 0.53114 |
| Mean single sequence MFE | -42.54 |
| Consensus MFE | -31.66 |
| Energy contribution | -31.98 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14116276 119 - 22422827 UGCGAGUGGUUCUCGCAAUUUCGCUUGGAUAGGUCCUGGCUGGAGGUGGAUAUAGUGCAACUGAGCGUACUCACCACACCAAAAGGA-UACGCGAGUGCAAGAGAGAACCAGCGAGAUGA ((((((.....))))))((((((((.((....(((((...(((..((((....(((((........)))))..)))).)))..))))-)((....))...........)))))))))).. ( -41.80, z-score = -2.13, R) >droEre2.scaffold_4690 5934602 120 + 18748788 UGCGGGUUGUUCUCGCAAUUUCGCUCCGAUAUGUCCUGACUGGAUGUGCAUAUAGUACGACUGAGCGUACUCACCACCCCAAAAGGAUAACGCGAGUGCAAGAGAGAGCCGACGAGAUGG .....(((((((((....((.(((((((...((((((...(((..(((.....((((((......))))))...))).)))..)))))).)).))))).))..))))).))))....... ( -35.20, z-score = -0.67, R) >droYak2.chrX 8369615 119 - 21770863 UGCGGCUUGUUCUCGCAAUUUCGCUCGGAUAUGUCCUGACUGGAGGUGAAUAUAGUACAGCUAAGCGUACUCACCACGCCGAAAGGA-AACGCGAGUGCAAGAGAGAGCCAACGAGAUGG ...(((((.((((.(((...((((((((.....(((.....)))(((((.....((((.((...)))))))))))...))))..(..-..))))).))).)))).))))).......... ( -40.90, z-score = -2.03, R) >droSec1.super_20 720136 118 - 1148123 UGCGAGUUGUGCUCGCAAUUUCGCUUGGAUACGUCCUGGCUGGAGGUGGAUAUAGUGCAACUGAGCGUACUCACCACACC-AAAGGA-UACGCGAGUGCCAGAGCGAGCCAGCGACAUGA ((((((.....))))))...(((((.((...((..((((((((..((((....(((((........)))))..)))).))-).....-.((....)))))))..))..)))))))..... ( -46.10, z-score = -2.35, R) >droSim1.chrU 2037148 119 + 15797150 UGCGAGUUGUUCUCGCAAUUUCGCUUGGAUACGUCCUGGCUGGAGGUGGAUAUAGUGCAACUGAGCGUACUCACCACACCAAAAGGA-UACGCGAGUGCCAGAGCGAGCCAGCGAGAUGA ((((((.....))))))((((((((.((...((..((((((((..((((....(((((........)))))..)))).)))......-.((....)))))))..))..)))))))))).. ( -48.70, z-score = -3.46, R) >consensus UGCGAGUUGUUCUCGCAAUUUCGCUUGGAUACGUCCUGGCUGGAGGUGGAUAUAGUGCAACUGAGCGUACUCACCACACCAAAAGGA_UACGCGAGUGCAAGAGAGAGCCAGCGAGAUGA ((((((.....))))))((((((.((((.....((((...(((..((((....(((((........)))))..)))).)))..))))..((....))...........)))))))))).. (-31.66 = -31.98 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:27 2011