| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,102,075 – 14,102,167 |
| Length | 92 |
| Max. P | 0.991587 |
| Location | 14,102,075 – 14,102,167 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.50114 |
| G+C content | 0.51137 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -15.41 |
| Energy contribution | -16.62 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14102075 92 - 22422827 ------AAACGCUGCACAUUCUGGCGCUAAUCGGUCUCCCUGCCACUUGGGGGCAGCCACUGAUGG-CUGUCCAAAGGCAAAUUAUCCGAUUACUCUAU ------...((((.........)))).(((((((......((((......(((((((((....)))-))))))...))))......)))))))...... ( -32.70, z-score = -2.87, R) >droEre2.scaffold_4690 5920448 91 + 18748788 ------AAACGCUGCACACUGCGGCGCUAAUCGGUCUCCAUGCCACUU-GGGGCAACCACUGAUGG-UUGUCCAGCGGCAAAUUACCCGAUUACUAUAU ------...((((((.....)))))).(((((((......((((.((.-.(((((((((....)))-)))))))).))))......)))))))...... ( -38.30, z-score = -4.81, R) >droYak2.chrX 8356048 91 - 21770863 ------AAACGCUGCACAUUCUGCCGCUAAUCGCUCUCCCUGCCACUU-GGGGCAGCCACCAAUCG-UUGUCCAAUGGCAAAUUACCCGAUUACUAUAU ------....((.(((.....))).))((((((.......(((((...-.(((((((........)-))))))..))))).......))))))...... ( -25.34, z-score = -2.82, R) >droSec1.super_20 706309 92 - 1148123 ------AAACGCUACACAUUGUGGCGCUAAUCGGUCUCCCUGCCACUUGGGGGCAGCCACCGAUGG-UUGUCCAAAGGCAAAUUACCCGAUUACUCUAU ------...((((((.....)))))).(((((((......((((......(((((((((....)))-))))))...))))......)))))))...... ( -34.70, z-score = -3.39, R) >droSim1.chrX_random 3774569 92 - 5698898 ------AAACGCUGCACAUUCUGGCGCUAAUCGGUCUCCCUGCCACUUGGGGGCAGCCACCGUUGG-UUGUCCAAAGGCAAAUUACCCGAUUACUCUAU ------...((((.........)))).(((((((......((((......(((((((((....)))-))))))...))))......)))))))...... ( -29.70, z-score = -1.65, R) >droVir3.scaffold_12970 9426106 98 + 11907090 AACUGUUACUGUUAUACGCGCGCGUGC-AUUUGACCUUGCUGAAGUUUAAAGGCUGAUGCAAUCGGAGUUUGGGGCGAUAAGCCGACAAAUUCUUCUAC ....................((..(((-(((.(.((((...........))))).))))))..))(((((((.(((.....)))..)))))))...... ( -23.80, z-score = 0.15, R) >consensus ______AAACGCUGCACAUUCUGGCGCUAAUCGGUCUCCCUGCCACUUGGGGGCAGCCACCGAUGG_UUGUCCAAAGGCAAAUUACCCGAUUACUCUAU .........(((((.......))))).(((((((......((((......(((((((((....))).))))))...))))......)))))))...... (-15.41 = -16.62 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:21 2011