Locus 14555

Sequence ID dm3.chrX
Location 14,099,606 – 14,099,736
Length 130
Max. P 0.999406
window20039 window20040

overview

Window 9

Location 14,099,606 – 14,099,719
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.83
Shannon entropy 0.20794
G+C content 0.50557
Mean single sequence MFE -43.00
Consensus MFE -33.12
Energy contribution -32.20
Covariance contribution -0.92
Combinations/Pair 1.26
Mean z-score -2.75
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.97
SVM RNA-class probability 0.977394
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14099606 113 - 22422827
AGAUUUUCCGGCUUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUAUCGUGGUGGUCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUG------GCGAGUGAAAUGCGAGAUUGGC-
((((..(((((...(((..(((((..(((((((((..((((..........))))..))))))))))))))...)))..)))))..)))).------((.(((..........))).))- ( -40.80, z-score =  -2.69, R)
>droEre2.scaffold_4690 5917818 111 + 18748788
AGAUUUUCCGGCAUCAAGGGCCCAAGAACGUUGGGUCUGCCCGCAUGUCGG--UGGGCUCAAUGUCUGGGUAAAUUG-ACUGGAUUAUCUG------GCGAGUGAAAUGCGAGAUUGGCC
((((..(((((..((((..(((((.((.(((((((((..((........))--..))))))))))))))))...)))-))))))..))))(------((.(((..........))).))) ( -45.40, z-score =  -2.94, R)
>droYak2.chrX 8353305 118 - 21770863
AGAUUUUCCGGCUUCAAGGGCCCAGGAACGUUGAGUUUGCCAGCAUGUUGG--UGGGCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUGUGAAAUGCGAGUGAAAUGCGAGAUGGGCA
((((..(((((...(((..((((((..((((((((((..((((....))))--..))))))))))))))))...)))..)))))..)))).................(((.......))) ( -46.40, z-score =  -3.85, R)
>droSec1.super_20 704102 113 - 1148123
AGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGGCUGGUCUCAAUGUCUGGGUAAAUUGUACUGGACUAUCUG------GCGAGUGAAAUGCGAGAUUGGC-
......(((((...(((..(((((..(((((((((...(((.(((.....))).)))))))))))))))))...)))..)))))(.((((.------(((.......))).)))).)..- ( -42.80, z-score =  -2.59, R)
>droSim1.chrX_random 3771578 113 - 5698898
AGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGGUUGCUCUCAAUGCCUGGGUAAAUUGUACUGGACUAUCUG------GCGAGUGAAAUGCGAGAUUGGC-
......(((((...(((..(((((.((.(((((((..((((((.....)))).))..))))))))))))))...)))..)))))(.((((.------(((.......))).)))).)..- ( -39.60, z-score =  -1.70, R)
>consensus
AGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGG_UGGUCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUG______GCGAGUGAAAUGCGAGAUUGGC_
((((..(((((...(((..((((.(((.(((((((..((((((.....)))).))..))))))))))))))...)))..)))))..)))).......(((.......))).......... (-33.12 = -32.20 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 14,099,623 – 14,099,736
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.81
Shannon entropy 0.24071
G+C content 0.48344
Mean single sequence MFE -46.66
Consensus MFE -36.94
Energy contribution -36.42
Covariance contribution -0.52
Combinations/Pair 1.26
Mean z-score -4.66
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.86
SVM RNA-class probability 0.999406
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 14099623 113 - 22422827
CUCAA-UCAAUUGCAGUUAGAUUUUCCGGCUUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUAUCGUGGUGGUCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUGGCGAG------
.....-.........(((((((..(((((...(((..(((((..(((((((((..((((..........))))..))))))))))))))...)))..)))))..)))))))...------ ( -45.90, z-score =  -4.98, R)
>droEre2.scaffold_4690 5917836 110 + 18748788
AUCAA-UCAAUUUCAGUUAGAUUUUCCGGCAUCAAGGGCCCAAGAACGUUGGGUCUGCCCGCAUGUCGG--UGGGCUCAAUGUCUGGGUAAAUUG-ACUGGAUUAUCUGGCGAG------
.....-.........(((((((..(((((..((((..(((((.((.(((((((((..((........))--..))))))))))))))))...)))-))))))..)))))))...------ ( -47.20, z-score =  -4.89, R)
>droYak2.chrX 8353323 118 - 21770863
CUCAACCCAAUUUCAGUUAGAUUUUCCGGCUUCAAGGGCCCAGGAACGUUGAGUUUGCCAGCAUGUUGG--UGGGCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUGUGAAAUGCGAG
(((......((((((..(((((..(((((...(((..((((((..((((((((((..((((....))))--..))))))))))))))))...)))..)))))..)))))))))))..))) ( -50.40, z-score =  -5.45, R)
>droSec1.super_20 704119 113 - 1148123
CUCAA-UCAAUUGCAGUUAGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGGCUGGUCUCAAUGUCUGGGUAAAUUGUACUGGACUAUCUGGCGAG------
.....-.........(((((((..(((((...(((..(((((..(((((((((...(((.(((.....))).)))))))))))))))))...)))..)))))..)))))))...------ ( -46.50, z-score =  -4.41, R)
>droSim1.chrX_random 3771595 113 - 5698898
CUCAA-UCAAUUGCAGUUAGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGGUUGCUCUCAAUGCCUGGGUAAAUUGUACUGGACUAUCUGGCGAG------
.....-.........(((((((..(((((...(((..(((((.((.(((((((..((((((.....)))).))..))))))))))))))...)))..)))))..)))))))...------ ( -43.30, z-score =  -3.58, R)
>consensus
CUCAA_UCAAUUGCAGUUAGAUUUUCCGGCAUCAAGGACCCAAGGACAUUGAGUUCGCCUGCCUGUCGGG_UGGUCUCAAUGUCUGGGUAAAUUGUACUGGAUUAUCUGGCGAG______
...............(((((((..(((((...(((..((((.(((.(((((((..((((((.....)))).))..))))))))))))))...)))..)))))..)))))))......... (-36.94 = -36.42 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:20 2011