| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,086,846 – 14,086,920 |
| Length | 74 |
| Max. P | 0.998710 |
| Location | 14,086,846 – 14,086,920 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 63.74 |
| Shannon entropy | 0.69741 |
| G+C content | 0.45217 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -8.07 |
| Energy contribution | -9.05 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.46 |
| SVM RNA-class probability | 0.998710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14086846 74 - 22422827 UUGCAGUGGGAAACGACGGGAUCCGAAACAGAAACCGACACAGAAACAUUUACCCAUUUGGAUGACCCAUUGCA .(((((((((......(((..((.......))..))).........((((((......)))))).))))))))) ( -22.10, z-score = -3.76, R) >droSim1.chrX 10829603 74 - 17042790 UUGCAGUGGGAAACGACGGGAUCCGAAACAGAAACCGACACAGAAACAUUUGCCCAUUUGGAUGACCCAUUGCA .(((((((((......(((..((.......))..))).........(((((........))))).))))))))) ( -21.40, z-score = -2.84, R) >droSec1.super_20 691270 74 - 1148123 UUGCAGUGGGAAACGACGGGAUCCGAAACAGAAACCGACACAGAAACAUUUACCCAUUUGGAUGACCCAUUGCA .(((((((((......(((..((.......))..))).........((((((......)))))).))))))))) ( -22.10, z-score = -3.76, R) >droEre2.scaffold_4690 5905107 67 + 18748788 UUGCAGUGGGAAACGACGGGAUCCGAAACACAAA-------AAAAACAUUUACCCAUUUGGAUGACCCAUUGCA .(((((((((......(((...))).........-------.....((((((......)))))).))))))))) ( -19.00, z-score = -2.84, R) >droWil1.scaffold_180708 9145430 67 - 12563649 UCACAGUCAUAAACCAUAUGAGCAACAGCAGCAG------CAGCGUCAAAUGGACAACUGGGCAA-CUAUUGUA .............((((.(((((....)).((..------..)).))).))))((((.(((....-))))))). ( -14.70, z-score = -0.99, R) >droMoj3.scaffold_6359 1778813 65 + 4525533 ------UAAGAAGUAACAUGA-CUGGACUGGGAUCCCAAAAUACAGCAAUUUGACUGUUGCUUU--UUGUGGCA ------((((((((((((((.-(((...(((....))).....))))).......)))))))))--)))..... ( -15.71, z-score = -1.36, R) >consensus UUGCAGUGGGAAACGACGGGAUCCGAAACAGAAACCGACACAGAAACAUUUACCCAUUUGGAUGACCCAUUGCA ..((((((((......((.....)).....................((((((......)))))).)))))))). ( -8.07 = -9.05 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:19 2011