| Sequence ID | dm3.chrX |
|---|---|
| Location | 14,020,370 – 14,020,441 |
| Length | 71 |
| Max. P | 0.514842 |
| Location | 14,020,370 – 14,020,441 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 68.46 |
| Shannon entropy | 0.54413 |
| G+C content | 0.46146 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -11.08 |
| Energy contribution | -10.52 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14020370 71 + 22422827 GAACAGAAGAGGC-AAAAAGGGGCAGCCACCAAUGGA--GGUUGCACCUCCU-----UGUUUUUUUCUUCACCGGUUUA (((..((((((((-((..(((.((((((.((...)).--)))))).)))..)-----))))))))).)))......... ( -23.90, z-score = -1.95, R) >droSim1.chrX 10768665 72 + 17042790 GAACAGAAGAGGCGAAAAAGGGGCAGCCACCAAUGGA--GGUUGCACCUCCU-----UGUUUUUUUCUUCGCAAGUUUA ((((.(((((((.(((.(((((((((((.((...)).--))))))...))))-----).))).)))))))....)))). ( -23.30, z-score = -1.78, R) >droSec1.super_20 631423 74 + 1148123 GAACAGAAGGAGCCGAAAAGGGGGCGCCCCCAAUGGGAGGGUGGCCCCCCCC-----UGUUUUUUUUCUCCCCAGUUUA ((((....((((..((((((((((.((((((.......))).))).))))).-----...)))))..))))...)))). ( -28.80, z-score = -0.41, R) >droEre2.scaffold_4690 5841955 71 - 18748788 GAGCAGAAGAGGC-AAAAAGUGGCAGCCACCAAUGGA--UGUUGCACCUCCU-----UGUUUUUUUCUUCGCCGGCUUA ((((.((((((((-((..((..(((((..((...)).--.)))))..))..)-----)))....))))))....)))). ( -19.10, z-score = -0.19, R) >droAna3.scaffold_13047 1530072 67 + 1816235 ---------GAAU-GGAAAAAAAUGGCCACCAAUAGA--GGUUGCACUUUUUCUUAAUAUUUUUUUUUUCUUUUUUUUC ---------....-(((((((....((.(((......--))).))..)))))))......................... ( -9.20, z-score = -0.32, R) >consensus GAACAGAAGAGGC_AAAAAGGGGCAGCCACCAAUGGA__GGUUGCACCUCCU_____UGUUUUUUUCUUCGCCAGUUUA .....((((((((.....(((((..((.(((........))).))..)))))......))))))))............. (-11.08 = -10.52 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:15 2011