Sequence ID | dm3.chrX |
---|---|
Location | 14,019,365 – 14,019,433 |
Length | 68 |
Max. P | 0.965280 |
Location | 14,019,365 – 14,019,433 |
---|---|
Length | 68 |
Sequences | 5 |
Columns | 82 |
Reading direction | forward |
Mean pairwise identity | 66.85 |
Shannon entropy | 0.54303 |
G+C content | 0.41225 |
Mean single sequence MFE | -16.00 |
Consensus MFE | -6.73 |
Energy contribution | -6.29 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.33 |
Mean z-score | -2.31 |
Structure conservation index | 0.42 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.965280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14019365 68 + 22422827 CACAAUUUUUCCGUUCACCUUCAUCAACGUG----------CAUUGAUUAGCAAUUCAAUGCAGAUGAAAACUGCAAU---- ............((.....((((((....((----------((((((........))))))))))))))....))...---- ( -15.30, z-score = -2.67, R) >droSim1.chrX 10767675 68 + 17042790 CACAAUUUUUCCGUUCACCUUCAUCAACGUG----------CAUUGAUUAGCAAUUCAAUGCAGAUGAAAACUGCAAU---- ............((.....((((((....((----------((((((........))))))))))))))....))...---- ( -15.30, z-score = -2.67, R) >droYak2.chrX 8278340 68 + 21770863 UACAAUUUUUCCGCUCACCUUCAUCCACGUG----------CAUUGAUUAGCAAUUCAAUGCAGAUGAAAGCUGCAAG---- ............((...(.((((((....((----------((((((........)))))))))))))).)..))...---- ( -17.10, z-score = -3.04, R) >droEre2.scaffold_4690 5841020 57 - 18748788 -----------CACAAAGCUCCAUCAACGUG----------CAUUGAUUAGCAAUUCAAUGCAGAUGGAAACUGCAGG---- -----------......((((((((....((----------((((((........))))))))))))))....))...---- ( -18.00, z-score = -3.36, R) >droAna3.scaffold_13047 1529178 82 + 1816235 CGCCACCUUGCCACUUACCUUCUGCAAUCUGGAAUCUGCGGCAUUGAUUAGCAAUUCCAUGUAGCAAGUUGUCCUCUCCAUU ...((.(((((...........((((...((((((.(((...........)))))))))))))))))).))........... ( -14.30, z-score = 0.18, R) >consensus CACAAUUUUUCCGCUCACCUUCAUCAACGUG__________CAUUGAUUAGCAAUUCAAUGCAGAUGAAAACUGCAAG____ ...................((((((................((((((........))))))..))))))............. ( -6.73 = -6.29 + -0.44)
Location | 14,019,365 – 14,019,433 |
---|---|
Length | 68 |
Sequences | 5 |
Columns | 82 |
Reading direction | reverse |
Mean pairwise identity | 66.85 |
Shannon entropy | 0.54303 |
G+C content | 0.41225 |
Mean single sequence MFE | -20.16 |
Consensus MFE | -8.23 |
Energy contribution | -7.87 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.40 |
Mean z-score | -2.28 |
Structure conservation index | 0.41 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.953506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 14019365 68 - 22422827 ----AUUGCAGUUUUCAUCUGCAUUGAAUUGCUAAUCAAUG----------CACGUUGAUGAAGGUGAACGGAAAAAUUGUG ----...(((((((((...((((((((........))))))----------))((((.((....)).))))).)))))))). ( -18.10, z-score = -1.91, R) >droSim1.chrX 10767675 68 - 17042790 ----AUUGCAGUUUUCAUCUGCAUUGAAUUGCUAAUCAAUG----------CACGUUGAUGAAGGUGAACGGAAAAAUUGUG ----...(((((((((...((((((((........))))))----------))((((.((....)).))))).)))))))). ( -18.10, z-score = -1.91, R) >droYak2.chrX 8278340 68 - 21770863 ----CUUGCAGCUUUCAUCUGCAUUGAAUUGCUAAUCAAUG----------CACGUGGAUGAAGGUGAGCGGAAAAAUUGUA ----.((((.(((((((((((((((((........))))))----------)....))))))))))..)))).......... ( -22.70, z-score = -3.08, R) >droEre2.scaffold_4690 5841020 57 + 18748788 ----CCUGCAGUUUCCAUCUGCAUUGAAUUGCUAAUCAAUG----------CACGUUGAUGGAGCUUUGUG----------- ----...((((.(((((((((((((((........))))))----------))....)))))))..)))).----------- ( -19.40, z-score = -3.31, R) >droAna3.scaffold_13047 1529178 82 - 1816235 AAUGGAGAGGACAACUUGCUACAUGGAAUUGCUAAUCAAUGCCGCAGAUUCCAGAUUGCAGAAGGUAAGUGGCAAGGUGGCG ...........((.((((((((.(((((((((...........))).))))))..((((.....)))))))))))).))... ( -22.50, z-score = -1.16, R) >consensus ____AUUGCAGUUUUCAUCUGCAUUGAAUUGCUAAUCAAUG__________CACGUUGAUGAAGGUGAGCGGAAAAAUUGUG ..........(((((((((..((((((........))))))................)))))))))................ ( -8.23 = -7.87 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:14 2011