| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,375,647 – 11,375,741 |
| Length | 94 |
| Max. P | 0.803130 |
| Location | 11,375,647 – 11,375,741 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 70.50 |
| Shannon entropy | 0.57505 |
| G+C content | 0.49009 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -13.95 |
| Energy contribution | -13.98 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11375647 94 - 23011544 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCUCUGG-AGACGAGCGACCAUU-CCCAUUUCCAUUUUCAUAUCAAU------------- ....((((...((((((((........))))).)))(((((.(((((((.((....-))))))))).)))))-.....))))..............------------- ( -29.10, z-score = -2.36, R) >droEre2.scaffold_4929 12572946 106 + 26641161 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCUCUGG-AGACGAGCGACCAUU-CCCAUUCCCAUUCCCAUUUCCAUUU-UCAUAUCAAU ....(((((..((((((((........)))).....(((((.(((((((.((....-))))))))).)))))-.))))....)))))...........-.......... ( -29.10, z-score = -1.85, R) >droYak2.chr2L 7772505 106 - 22324452 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCUCUGG-AGACGAGCGACCAUU-CCCAUUCCCAUUCGCAUUUCCAUUU-UCAUAUCAAU ....((((..(((((((((........)))))....(((((.(((((((.((....-))))))))).)))))-............)))).))))....-.......... ( -30.40, z-score = -1.93, R) >droSec1.super_3 6770106 88 - 7220098 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCUCUGG-AGACG----------------AGCGA---CCAUUCCCAUUU-UCAUAUCAAU ....((((.((((((((((........))))).)))))(((.(((((((.((....-)))))----------------)))).---))))))).....-.......... ( -27.70, z-score = -2.15, R) >droSim1.chr2L 11181785 94 - 22036055 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCUCUGG-AGACG-------------AGCGACCAUUCCCAUUUCCAUUU-UCAUAUCAAU ....((((...((((((((........))))).)))(((((.(((((((.((....-)))))-------------)))).))))).....))))....-.......... ( -29.10, z-score = -2.36, R) >dp4.chr4_group3 6819014 82 - 11692001 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGUCGCAUGUUCUCU---GGGCC-----------UUGCAGCCCGUUUUCAUAUCAAU------------- ..((((...(((..((.(((....((((.((.((......)).)).))))....---.))))-----------)..))).))))............------------- ( -20.70, z-score = 0.56, R) >droPer1.super_1 8266877 82 - 10282868 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGUCGCAUGUUCUCU---GGGCC-----------UUGCAGCCCGUUUUCAUAUCAAU------------- ..((((...(((..((.(((....((((.((.((......)).)).))))....---.))))-----------)..))).))))............------------- ( -20.70, z-score = 0.56, R) >droWil1.scaffold_181038 281660 77 + 637489 GUACGGAAUUUGUGGGUGCCAUAAAAUGCGCUACACGAUGGCCGCAUGUACU-------------------------UGGCCAUUUCCAUAACCACCUCGAA------- ....((((.((((((((((........))))).)))))((((((........-------------------------)))))).))))..............------- ( -22.40, z-score = -1.16, R) >droAna3.scaffold_12916 12085953 106 + 16180835 GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCUUGUUCGCCGGCGGACG--CUGCAAUUGCCGAAAGCCAUUGCCGUUUUCAUUU-UCAUAUCAAU ((.(((...((((((((((........))))).)))))...)))...(((((....))))))--).(((((.(.(....)).)))))...........-.......... ( -29.40, z-score = 0.89, R) >droVir3.scaffold_12963 18056534 82 + 20206255 GCACGGAAUUUGUGGGUGCCAUUAAACGCGCUACACGAUGGCCGCAUGUU---------GCG-----------UUUGCUCCCAUUUCCAUUUUUAUUU-UCAU------ ....((((...(((((.((....(((((((.((..((.....))..)).)---------)))-----------))))).)))))))))..........-....------ ( -21.30, z-score = -0.77, R) >droMoj3.scaffold_6500 5028205 83 + 32352404 GCACGGAAUUUGUGGGUGCCAUUAAACGCGCAACACGAUGGCCGCAUGUU---------GCG-----------UUUGCUCCCAUUUCCAUUUUUAUUUACCAU------ ....((((...(((((.((........((((((((((.....))..))))---------)))-----------)..)).)))))))))...............------ ( -22.60, z-score = -0.89, R) >droGri2.scaffold_15126 7194348 82 + 8399593 GCACGGAAUUUGUGGGUGCCAUUAAGUGCGAUACACGAUGGCCGCAUGUU---------GCG-----------UUUGCUCCCAUUUCCAUUUUUAUUU-CUAU------ ....((((...(((((.((((((..(((.....)))))))))(((.....---------)))-----------......)))))))))..........-....------ ( -22.00, z-score = -0.99, R) >consensus GCACGGAAUUUGUGGGUGCCAUAAAACGCGCUACACGAUGGCCGCAUGUUCUCU___AGACG___________UUCACUCCCAUUUCCAUUUCCAUUU_UCAU______ ...(((...((((((((((........))))).)))))...)))................................................................. (-13.95 = -13.98 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:14 2011