| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,993,524 – 13,993,614 |
| Length | 90 |
| Max. P | 0.888934 |
| Location | 13,993,524 – 13,993,614 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 74.65 |
| Shannon entropy | 0.47428 |
| G+C content | 0.42081 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -10.66 |
| Energy contribution | -10.50 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13993524 90 - 22422827 GAGGCGCUUUAAAAGAGCCAUCGUUCGAUACGUGUAUAUUAU--AUGGGCAGACGGAAGUCCUGCCUUUUGAAUAAAGAUAAGCUUCAAUCA- (((((((((.....))))....((((((..((((((...)))--)))(((((((....)).)))))..))))))........))))).....- ( -28.60, z-score = -3.32, R) >dp4.chrXL_group1e 6282135 86 + 12523060 GACUCUGCUUAAAGA----GCCAUUCAAUAUAAUGUUAUUAUGGACAGGGGUACGGAUGUCCUGCC--UCGGCUAUGGGCUA-UUCAGAUAAA ((....(((((...(----(((...........((((......))))((((((.((....))))))--)))))).)))))..-.))....... ( -23.40, z-score = -1.17, R) >droEre2.scaffold_4690 5824029 86 + 18748788 GAGCCGCUUUAAAGA----GUCGUUCGAUACGUGAAUAUUCU--AUGGGCAGGCGGAAGUCCUGUCUUUUGAGUAGAGAUAAGCCUAAAUCA- ((((.((((....))----)).))))..........(((((.--..((((((((....).)))))))...)))))..(((........))).- ( -25.10, z-score = -1.70, R) >droYak2.chrX 8261069 80 - 21770863 ------UUUUAAAGA----GCCGUUCGAUACGUGAAUAUUUU--AUGGCCAGACGGAAGUCCUGCCUUUUGAAUAAAGAUAAGCUUCAAUCA- ------.......((----(((((.....)))....(((((.--..(((..(((....)))..)))....))))).......))))......- ( -16.70, z-score = -1.20, R) >droSec1.super_20 612955 90 - 1148123 GAGGCGCUUUAAAAGAGCCGUCGUUCGAUACGUGUAUAUUAU--AUGGGCAGACGGAAGUCCUGCCCUUUGAAUAAAGAUAAGCUUCAAUCA- (((((((((.....)))).(((((((((...(((((...)))--))((((((((....)).)))))).))))))...)))..))))).....- ( -29.30, z-score = -3.21, R) >droSim1.chrX_random 3759196 90 - 5698898 GAGGCGCUUUAAAAGAGCCGUCGUUCGAUACGUGUAUAUUAU--AUGGGCAGACGGAAGUCCUGCCCUUUGAAUAAAGAUAAGCUUCAAUCA- (((((((((.....)))).(((((((((...(((((...)))--))((((((((....)).)))))).))))))...)))..))))).....- ( -29.30, z-score = -3.21, R) >consensus GAGGCGCUUUAAAAA____GUCGUUCGAUACGUGUAUAUUAU__AUGGGCAGACGGAAGUCCUGCCUUUUGAAUAAAGAUAAGCUUCAAUCA_ ......(((((..........(((.....)))..............((((((((....)).))))))......)))))............... (-10.66 = -10.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:07 2011