Locus 14544

Sequence ID dm3.chrX
Location 13,991,269 – 13,991,361
Length 92
Max. P 0.818840
window20022

overview

Window 2

Location 13,991,269 – 13,991,361
Length 92
Sequences 7
Columns 93
Reading direction reverse
Mean pairwise identity 90.52
Shannon entropy 0.18489
G+C content 0.50332
Mean single sequence MFE -28.47
Consensus MFE -24.18
Energy contribution -25.16
Covariance contribution 0.98
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.79
SVM RNA-class probability 0.818840
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13991269 92 - 22422827
AUUGCGCAUACGCACUGUGCGCCCUGUGCACCCUGCAGCUUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAAACACUGACAUC
...(((((..((((..((((((...))))))..))).)..))))).-..(((((.........)))))....((((((......))))))... ( -29.80, z-score =  -1.53, R)
>droEre2.scaffold_4690 5822031 92 + 18748788
AUUGCGCAUACGCACUGUGCGCCCUGUGCACCCUGCAAGUUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAAACACUGACAUC
.(((((((((.(((..((((((...))))))..)))..((((((..-...)))))).)))))..))))....((((((......))))))... ( -30.80, z-score =  -1.99, R)
>droYak2.chrX 8258078 92 - 21770863
AUUGCGCAUACGCACUGUGCGCCCUGUGCACCCUGCAGCUUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAAACACUGACAUC
...(((((..((((..((((((...))))))..))).)..))))).-..(((((.........)))))....((((((......))))))... ( -29.80, z-score =  -1.53, R)
>droSec1.super_20 610812 92 - 1148123
AUUGCGCAUACGCACUGUGCGCCCUGUGCACCCUGCAGCUUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAAACACUGACAUC
...(((((..((((..((((((...))))))..))).)..))))).-..(((((.........)))))....((((((......))))))... ( -29.80, z-score =  -1.53, R)
>droWil1.scaffold_181096 8583237 78 - 12416693
---GCGCAUACGCACUGUGCACUCU-----------AGAAUGCGCCUUUUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUUAAA-ACUGACAUU
---((((((..((.....)).(...-----------.).))))))(..((((((.........))))))..)((((((.....-))))))... ( -20.90, z-score =  -1.33, R)
>droPer1.super_21 414901 89 + 1645244
AUUGCGCAUACGCACUGUGCACCCU-UGCACCCUGCAGCAUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAA--ACUGACAUC
...((((((.((((..(((((....-)))))..))).).)))))).-..(((((.........)))))....((((((....--))))))... ( -29.10, z-score =  -2.17, R)
>dp4.chrXL_group1e 6279812 89 + 12523060
AUUGCGCAUACGCACUGUGCACCCU-UGCACCCUGCAGCAUGCGCC-UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAA--ACUGACAUC
...((((((.((((..(((((....-)))))..))).).)))))).-..(((((.........)))))....((((((....--))))))... ( -29.10, z-score =  -2.17, R)
>consensus
AUUGCGCAUACGCACUGUGCGCCCUGUGCACCCUGCAGCUUGCGCC_UAUUGCAAUAUAUGCCUGCAGAUUGGUCAGUUCAAACACUGACAUC
...(((((...(((..(((((.....)))))..)))....)))))....(((((.........)))))....((((((......))))))... (-24.18 = -25.16 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:06 2011