| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,985,182 – 13,985,280 |
| Length | 98 |
| Max. P | 0.620200 |
| Location | 13,985,182 – 13,985,280 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 73.78 |
| Shannon entropy | 0.46768 |
| G+C content | 0.50573 |
| Mean single sequence MFE | -19.96 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13985182 98 + 22422827 UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCUGAUCU-GCCCCUCGGAACUCGAUUCCCCCGCUACCCGAACCGCUCCCCCUUUC .......(((((((.....((((((.......)))))))))))))......-((...((((....((.......))....))))...)).......... ( -21.70, z-score = -1.68, R) >droSim1.chrX_random 3748280 85 + 5698898 UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCUGAUCU-GCCCCUCGGAACUCGAUUCCCCCGCUCCCCUUUC------------- .......(((((((.....((((((.......)))))))))))))......-((.....((((.....))))...)).........------------- ( -18.40, z-score = -0.94, R) >droSec1.super_20 604896 85 + 1148123 UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCAGAUCU-GCCCCUCGGAACUCGAUUGCCCCGCUCCCCUUUU------------- .....(((((((((.....((((((.......)))))))))))))))....-......(((..(......)..)))..........------------- ( -20.00, z-score = -0.97, R) >droYak2.chrX 8251496 82 + 21770863 UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCUGAUCU-GCCCCUCAGAACUCGAUUCAUCCCCCCCCAC---------------- .......(((((((.....((((((.......)))))))))))))...(((-(.....)))).....................---------------- ( -18.10, z-score = -1.86, R) >droEre2.scaffold_4690 5816305 82 - 18748788 UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCUGAUCU-GCCCCUCGGAACUCGAU----CCGCGCCCCUUUUA------------ .......(((((((.....((((((.......)))))))))))))......-((....((((......)----))).))........------------ ( -19.90, z-score = -1.24, R) >dp4.chrXL_group1e 6272259 85 - 12523060 UUUAAUUGCAGUUAGAACUUGGCUUAAAGCCACAGUCAUAACGGGGUAUCUUAGCCGCCACAGCUC--UUGGCUCUCUUCCGUUUCU------------ ..........((((..(((((((.....)))).)))..))))(((((......)))((((......--.))))......))......------------ ( -20.80, z-score = -0.95, R) >droPer1.super_21 406172 85 - 1645244 UUUAAUUGCAGUUAGAACUUGGCUUAAAGCCACAGUCAUAACGGGGUAUCUUAGCCGCCACAGCUC--UUGGCUCUCUUCCGUUUCU------------ ..........((((..(((((((.....)))).)))..))))(((((......)))((((......--.))))......))......------------ ( -20.80, z-score = -0.95, R) >consensus UUUAAUUGCUGUUAGAACUUGGCCACAGAACUUGGCCAUAACGGCUGAUCU_GCCCCUCGGAACUCGAUUCCCCCGCUCCCCUUUC_____________ .......(((((((.....((((((.......)))))))))))))...................................................... (-11.60 = -11.84 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:02 2011